This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PY6B.1

Display Name: France/LOC_000PY6B.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
761

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
308
Total SNPs S
30
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
18.42%

Submission details

Submission ID
PV976888.1.S
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G67A
  • S:A80G
  • S:A83G
  • S:G86A
  • S:A124G
  • S:G129A
  • S:C166T
  • S:C177A
  • S:G185C
  • S:C187G
  • S:T199C
  • S:G202A
  • S:A209G
  • S:C235T
  • S:C241T
  • S:C244T
  • S:A247G
  • S:C267A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9D
  • NP:K10E
  • NP:D11N
  • NP:G25E
  • NP:P41H
  • NP:D44Q
  • NP:S52G
  • NP:T71K
  • NP:E79Q
  • NP:V89A
  • NP:K91R
  • NP:L93P
    • Deletions
    None
    Insertions
    None

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