This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PY2K.1

Display Name: Tajikistan/LOC_000PY2K.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Earliest release date
2025-06-15
Collection country
Tajikistan
Isolate name
CCHFV_24_179

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

NCBI release date
2025-06-15
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma anatolicum

Alignment and QC metrics S

Length S
503
Total SNPs S
61
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
11
Total frame shifts S
0
Completeness S
29.43%

Submission details

Submission ID
PV738575.1.S
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A856G
  • S:T862C
  • S:G864A
  • S:C871T
  • S:G879A
  • S:G901A
  • S:T904C
  • S:T907C
  • S:C925T
  • S:T928C
  • S:T934C
  • S:A937G
  • S:A955G
  • S:A956G
  • S:C958T
  • S:T991C
  • S:T997C
  • S:T1006C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:K354R
    • Deletions
    None
    Insertions
    None

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