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LOC_000PXYT.1
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Download metadata TSV
Display Name: Tajikistan/LOC_000PXYT.1/2023-05-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-07
Collection date (lower bound)
2023-05-07
Collection date (upper bound)
2023-05-07
Earliest release date
2025-06-15
Collection country
Tajikistan
Isolate name
CCHFV_26_26
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-14 07:07
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-06-15
INSDC accession L
PV738569.1
INSDC accession S
PV738568.1
Host
Host taxon id
176092
Host name scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
11699
Total SNPs L
1247
Total inserted nucs L
29
Total deleted nucs L
1
Total ambiguous nucs L
25
Total unknown nucs L
2542
Total frame shifts L
0
Completeness L
75.19%
Alignment and QC metrics S
Length S
1246
Total SNPs S
169
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
9
Total unknown nucs S
8
Total frame shifts S
0
Completeness S
73.44%
Submission details
Submission ID
PV738569.1.L/PV738568.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PXYT.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
466
C
L:
G
472
A
L:
C
475
T
L:
G
490
A
L:
T
493
C
L:
G
502
A
L:
T
508
A
L:
A
526
G
L:
C
529
T
L:
T
535
C
L:
G
538
T
L:
C
541
T
L:
A
547
G
L:
T
550
G
L:
G
553
A
L:
A
563
G
L:
A
565
T
L:
A
571
G
Show more
S
S:
A
425
G
S:
G
428
A
S:
G
429
A
S:
A
439
G
S:
C
445
T
S:
T
446
C
S:
G
448
C
S:
A
457
G
S:
A
460
G
S:
C
472
T
S:
C
484
A
S:
C
487
T
S:
A
490
G
S:
T
496
C
S:
C
497
T
S:
G
499
A
S:
A
503
C
S:
A
520
G
Show more
Deletions
L:12000
Insertions
ins_L:11922:TC, ins_L:12108:CACCGTTCATTTCAGTTTGATTATTTC, ins_S:1579:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
S
409
G
RdRp:
T
481
A
RdRp:
S
498
G
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
V
515
I
RdRp:
R
751
H
RdRp:
R
764
K
Show more
Deletions
None
Insertions
None
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