This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PXU1.1

Display Name: France/LOC_000PXU1.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
3424

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
1547
Total SNPs S
170
Total inserted nucs S
2
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
250
Total frame shifts S
1
Frame shifts S
NP:419-483(nt:1310-1504)
Completeness S
77.45%

Submission details

Submission ID
PV976885.1.S
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T132C
  • S:A150T
  • S:T155C
  • S:C166T
  • S:C178A
  • S:G189A
  • S:G190A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:G221C
  • S:G224C
  • S:G233C
  • S:C235T
  • S:A239G
  • S:C241T
  • S:C244T
  • S:A247G
    • Deletions
    None
    Insertions
    ins_S:1309:G, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:L26P
  • NP:N32I
  • NP:Y34H
  • NP:R45K
  • NP:S52G
  • NP:D56H
  • NP:A57P
  • NP:D60H
  • NP:I62V
  • NP:K91R
  • NP:E94Q
  • NP:G101A
  • NP:E112Q
  • NP:E121Q
  • NP:T124A
  • NP:G125N
  • NP:D136H
  • NP:E161Q
    • Deletions
    None
    Insertions
    None

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