This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PXT3.1

Display Name: Kazakhstan/LOC_000PXT3.1/2024
B. M. A. Maxat, M. G. K. Gulzhan, M. K. T. Kydyrbay, S. S. K. Serik, K. B. A. Balzhan & N. B. R. Botagoz

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-05-21
Collection country
Kazakhstan
Collection subdivision level 1
Turkestan, Shardara
Isolate name
KAZ/165/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Kazakh Scientific Research Veterinary Institute

INSDC

NCBI release date
2025-05-21
INSDC accession L

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
528
Total SNPs L
80
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
4.36%

Submission details

Submission ID
PV646619.1.L
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A526G
  • L:C529T
  • L:T535C
  • L:G538T
  • L:C541T
  • L:T550G
  • L:G553A
  • L:A563G
  • L:A565T
  • L:A571G
  • L:G578A
  • L:C586T
  • L:A590G
  • L:G592A
  • L:C595T
  • L:G597A
  • L:T601C
  • L:A622C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:I223M
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

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