This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PXPB.1

Display Name: Senegal/LOC_000PXPB.1/2022-09
O. Sene, S. N. Sagne, D. Ngom, M. Bocoum, M. K. Diallo, A. Khoule, E. T. Faye, S. M. Diop, I. Diallo, C. Loucoubar, M. Diallo, N. Dia, Y. Sall, B. Diop, M. Ndiaye, A. A. Sall, M. Weidmann, M. M. Diagne, M. Fall, O. Faye, E. Simon-Loriere, D. Diallo, M. A. Barry & G. Fall

Sample details

Collection date
2022-09
Collection date (lower bound)
2022-09-01
Collection date (upper bound)
2022-09-30
Earliest release date
2025-01-18
Collection country
Senegal
Isolate name
SH402092

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:18insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

INSDC

NCBI release date
2025-01-18
INSDC accession M

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics M

Length M
5356
Total SNPs M
141
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
3
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.76%

Submission details

Submission ID
PP894728.1.M
Submitting group
Date submitted
2025-10-27 14:18:35 UTC
Date released
2025-10-27 14:25:03 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:T68C
  • M:A70G
  • M:C194T
  • M:C217T
  • M:T259C
  • M:C269T
  • M:C320T
  • M:T360C
  • M:A377G
  • M:T385C
  • M:C404T
  • M:T406C
  • M:C410T
  • M:C412A
  • M:G414A
  • M:C426T
  • M:C428T
  • M:C431T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:P42L
  • GPC:L56P
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:A107E
  • GPC:G108S
  • GPC:P112S
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:S171P
  • GPC:L216P
  • GPC:H238S
  • GPC:K250E
  • GPC:Q273H
  • GPC:D484N
  • GPC:R579K
    • Deletions
    None
    Insertions
    None

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