This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PW6D.1

Display Name: Armenia/LOC_000PW6D.1/2022
A. Zhirova, Y. Lisitskaya & A. Volynkina

Sample details

Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-03-02
Collection country
Armenia
Isolate name
372-ARM-TI-2022

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

INSDC

NCBI release date
2025-03-02
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
538
Total SNPs S
82
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
32.18%

Submission details

Submission ID
PQ878904.1.S
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C115T
  • S:A121G
  • S:G134A
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G189A
  • S:T199C
  • S:T211C
  • S:C217T
  • S:C244T
  • S:T250G
  • S:G262A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None

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