This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PW5F.1

Display Name: Armenia/LOC_000PW5F.1/2022
A. Zhirova, Y. Lisitskaya & A. Volynkina

Sample details

Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-03-02
Collection country
Armenia
Isolate name
371-ARM-TI-2022

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

INSDC

NCBI release date
2025-03-02
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
538
Total SNPs S
107
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
32.18%

Submission details

Submission ID
PQ878903.1.S
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC

Lineage

Segment S Lineage
unassigned

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C115T
  • S:A118G
  • S:A121G
  • S:G123C
  • S:T127C
  • S:A130G
  • S:T133C
  • S:C145T
  • S:C154T
  • S:T163C
  • S:G169A
  • S:G171A
  • S:T175G
  • S:C178A
  • S:T182C
  • S:G189A
  • S:G190A
  • S:G196A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:G23A
  • NP:S39N
  • NP:R45K
  • NP:S52G
  • NP:A100T
  • NP:T124A
  • NP:G125S
  • NP:N150S
  • NP:A154S
  • NP:S165P
  • NP:G185S
  • NP:P189S
  • NP:H195R
  • NP:V198I
  • NP:D199E
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue