This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
LOC_000PUMJ.1
Download
Download FASTA
Download metadata TSV
Display Name: China/LOC_000PUMJ.1/1984
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Sample details
Collection date
1984
Collection date (lower bound)
1984-01-01
Collection date (upper bound)
1984-12-31
Earliest release date
2024-12-21
Collection country
China
Isolate name
BA84027
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-27 14:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
INSDC
NCBI release date
2024-12-21
INSDC accession L
OR823872.1
INSDC accession M
OR823875.1
INSDC accession S
OR823878.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
12693
Total SNPs L
1663
Total inserted nucs L
585
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Alignment and QC metrics M
Length M
5233
Total SNPs M
1000
Total inserted nucs M
54
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
96.52%
Alignment and QC metrics S
Length S
1780
Total SNPs S
217
Total inserted nucs S
110
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
100.00%
Submission details
Submission ID
OR823872.1.L/OR823875.1.M/OR823878.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-27 14:18:35 UTC
Date released
2025-10-27 14:25:03 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PUMJ.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
1
A
L:
C
2
T
L:
C
4
G
L:
G
8
A
L:
T
12
C
L:
C
13
A
L:
G
23
T
L:
A
35
G
L:
G
43
C
L:
T
49
C
L:
G
56
A
L:
T
58
C
L:
C
59
T
L:
T
62
C
L:
C
64
T
L:
T
65
G
L:
T
67
C
L:
G
71
T
Show more
M
M:
G
50
T
M:
A
51
G
M:
G
56
A
M:
A
57
C
M:
A
70
G
M:
T
71
A
M:
A
80
G
M:
C
81
T
M:
G
84
T
M:
C
85
T
M:
T
86
C
M:
A
88
G
M:
A
90
G
M:
C
92
T
M:
C
96
T
M:
T
98
C
M:
T
100
C
M:
T
102
C
Show more
S
S:
T
1
C
S:
C
2
T
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
91
A
S:
G
99
A
S:
A
118
G
S:
C
139
T
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
C
187
A
S:
T
223
C
Show more
Deletions
S:1611, S:1612
Insertions
ins_L:0:AGAGGCATTCTTCTCGTTCTCCTTTCACAAGTCCCAGTCCTTGCTTGGATGTCTCCCCTTCTCTAAACACCAGTACCAGTTTCAGTCAGAAGCTAAGTCCCTTCTCCAGAGTCACCTCCTTGAAATGGCAGGAGCAAAATGCAAGAACTGAAGATGGGGTTTACAAACCT, ins_L:16:TCCCTTGTGTGATGATGAAGAAAAGGATGCTCTTTTCTCTTTCACCCTAGGCCAACACTTAGG, ins_L:67:CC, ins_L:11928:TG, ins_L:12065:CAATTATTAGTTTGCCTT, ins_L:12089:TCACTATTCAT, ins_L:12108:TTATTTCCAGGGTGTGGGGGGAACGATTTCTTTTG...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
T
20
S
GPC:
S
23
L
GPC:
H
24
S
GPC:
E
26
K
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
GPC:
D
33
S
Show more
NP
NP:
R
15
K
NP:
D
44
E
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Q
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
281
T
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue