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LOC_000PU99.1
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Download FASTA
Download metadata TSV
Display Name: China/LOC_000PU99.1/1966
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Sample details
Collection date
1966
Collection date (lower bound)
1966-01-01
Collection date (upper bound)
1966-12-31
Earliest release date
2023-08-21
Collection country
China
Isolate name
66019
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-27 14:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
INSDC
NCBI release date
2023-08-21
INSDC accession L
OR047185.1
INSDC accession M
OR047165.1
INSDC accession S
OR047145.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12168
Total SNPs L
1607
Total inserted nucs L
60
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Alignment and QC metrics M
Length M
5368
Total SNPs M
1026
Total inserted nucs M
2
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
100.00%
Alignment and QC metrics S
Length S
1672
Total SNPs S
211
Total inserted nucs S
2
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
100.00%
Submission details
Submission ID
OR047185.1.L/OR047165.1.M/OR047145.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-27 14:18:35 UTC
Date released
2025-10-27 14:23:52 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PU99.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
C
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
G
69
A
L:
G
71
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
A
124
G
L:
T
125
C
L:
T
131
A
L:
C
136
T
L:
T
139
C
Show more
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
G
56
A
M:
A
61
G
M:
A
69
G
M:
T
71
A
M:
C
77
A
M:
A
80
G
M:
T
86
C
M:
C
92
T
M:
C
96
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
104
G
M:
A
108
G
M:
A
112
G
Show more
S
S:
T
48
C
S:
A
53
T
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
181
C
S:
T
182
C
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
256
A
S:
G
262
A
Show more
Deletions
S:1626, S:1627
Insertions
ins_L:58:T, ins_L:11925:GT, ins_L:12059:TTCTCACAA, ins_L:12083:GCTATTT, ins_L:12096:GTTTATATCAGTTTCATTATTTCCAGGGTGTGGGGGGAACG, ins_M:5169:GG, ins_S:1536:C, ins_S:1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
I
9
V
GPC:
L
12
P
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
G
22
V
GPC:
S
23
P
GPC:
R
28
K
GPC:
K
31
G
GPC:
D
33
G
GPC:
T
34
I
GPC:
M
35
T
Show more
NP
NP:
D
116
E
NP:
T
124
A
NP:
G
125
S
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
I
277
T
NP:
S
301
G
NP:
N
399
D
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
Y
17
H
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
V
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
None
Insertions
None
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