This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
LOC_000PTPF.1
Download
Download FASTA
Download metadata TSV
Display Name: Turkey/LOC_000PTPF.1/2020-06-08
J. D'Addiego,
S. Shah,
N. Elaldi,
D. Allen &
R. Hewson
Sample details
Collection date
2020-06-08
Collection date (lower bound)
2020-06-08
Collection date (upper bound)
2020-06-08
Earliest release date
2024-10-26
Collection country
Turkey
Isolate name
CCHFV_5
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-14 07:07
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2024-10-26
INSDC accession L
PP735321.1
INSDC accession M
PP735320.1
INSDC accession S
PP735319.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
5062
Total SNPs L
531
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
13
Total unknown nucs L
25
Total frame shifts L
0
Completeness L
41.49%
Alignment and QC metrics M
Length M
3055
Total SNPs M
487
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
10
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
56.75%
Alignment and QC metrics S
Length S
1498
Total SNPs S
220
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
4
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
89.35%
Submission details
Submission ID
PP735321.1.L/PP735320.1.M/PP735319.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:27 UTC
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000PTPF.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
254
A
L:
A
262
G
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
A
310
G
L:
C
313
T
L:
G
315
A
L:
A
316
G
L:
G
328
A
L:
C
331
T
L:
C
332
T
L:
C
346
T
L:
G
370
A
L:
A
376
G
L:
A
385
T
L:
A
388
G
Show more
M
M:
T
1271
A
M:
A
1273
G
M:
C
1274
T
M:
A
1277
G
M:
G
1280
A
M:
C
1292
T
M:
T
1299
C
M:
G
1301
A
M:
A
1303
G
M:
G
1304
A
M:
G
1310
A
M:
A
1311
G
M:
T
1325
C
M:
G
1331
A
M:
A
1337
G
M:
C
1352
T
M:
C
1355
T
M:
A
1358
G
Show more
S
S:
T
79
C
S:
A
81
G
S:
A
85
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
189
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
K
404
R
GPC:
I
407
V
GPC:
V
423
I
GPC:
K
435
N
GPC:
I
445
T
GPC:
A
448
P
GPC:
H
453
R
GPC:
V
459
T
GPC:
F
482
V
GPC:
D
484
N
GPC:
R
507
K
GPC:
R
517
K
GPC:
S
524
G
GPC:
G
543
D
GPC:
R
579
K
GPC:
E
585
K
GPC:
N
592
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
V
436
I
RdRp
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
V
515
I
RdRp:
A
719
V
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue