This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PTMK.1

Display Name: Nigeria/LOC_000PTMK.1/2019-12-02
O. B. Daodu, J. S. Shaibu, R. A. Audu & D. O. Oluwayelu

Sample details

Collection date
2019-12-02
Collection date (lower bound)
2019-12-02
Collection date (upper bound)
2019-12-02
Earliest release date
2025-01-10
Collection country
Nigeria
Isolate name
CCHFV/NGR/ILN/2021/F22

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Ilorin, Department of Veterinary Microbiology, Faculty of Veterinary Medicine

INSDC

NCBI release date
2025-01-10
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma truncatum

Alignment and QC metrics S

Length S
1228
Total SNPs S
23
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
73.44%

Submission details

Submission ID
PP645434.1.S
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:27 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G229A
  • S:T253C
  • S:A298G
  • S:A322G
  • S:G346A
  • S:A358T
  • S:C370T
  • S:G397A
  • S:C445T
  • S:A639G
  • S:A791G
  • S:A793G
  • S:G811A
  • S:C829T
  • S:T847C
  • S:A956G
  • S:C958T
  • S:T976C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:H195R
  • NP:I246V
  • NP:S301G
    • Deletions
    None
    Insertions
    None

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