This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PEJ4.1

Display Name: Hungary/LOC_000PEJ4.1/2023-01-01
A. Nagy, K. Kerenyi

Submission details

Submission ID
PP197722.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:29:06 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-09-19 17:22insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

Alignment states and QC metrics

Completeness
4.00%
Length
288
Total ambiguous nucs
0
Total deleted nucs
153
Total frame shifts
0
Total inserted nucs
0
Total SNPs
48
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 1
Hajdudorog
Collection country
Hungary
Collection date
2023-01-01
Isolate name
3360_NS3_WNV_Hungary_2023

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP197722.1
NCBI release date
2024-01-30
NCBI update date
2024-01-30

Lineage

Lineage
2

Nucleotide mutations

Substitutions

  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
  • G5308T
    • Deletions
    5067-5219
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS3

  • NS3:R215K
  • NS3:A233S
  • NS3:N253S
  • NS3:P277L
  • NS3:V283I
    • Deletions
    NS3:201-203
    Insertions
    None