This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PEDF.1

USA/LOC_000PEDF.1/2013-08-26
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2013-08-26
Earliest release date
2019-01-20
Sampling location
USA (Redding,California)
Isolate name
WNV/bird/Redding_CA_USA/2013-08-26/W160

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-23 00:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507742.1
Submitting group
Date submitted
2026-02-23 00:20:09 UTC
Date released
2026-02-23 00:31:48 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
71
Total unknown nucs
730
Length
10302 (86.8%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A332G
  • T378C
  • T477C
  • A630G
  • C660T
  • C732T
  • T1442C
  • G1455A
  • C1465T
  • A1566G
  • C1569T
  • T2250C
  • C2466T
  • A2908G
  • C3570T
  • G3900T
  • T3922C
  • C3969T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS1

  • NS1:N147D

    • NS2B

  • NS2B:T34S

    • NS3

  • NS3:I162M
  • NS3:A177V

    • NS5

  • NS5:K503R

    • capsid

  • capsid:K79R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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