This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PEDF.1

Romania/c6749/2015-01-01
S. Dinu

Molecular Epidemiology, Cantacuzino National Institute of Research, Splaiul Indepedentei, 103, Bucharest, N/A

Sample details

Collection date
2015
Earliest release date
2018-08-06
Sampling location
Romania (Sibiu county)
Isolate name
c6749

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-08-06
NCBI update date
2018-11-09
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
LS398546.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:53:57 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
71
Total deleted nucs
7759
Total frame shifts
1
Frame shifts
env:283(nt:1813-1815)
Length
322 (73.3%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T1368C
  • C1377T
  • A1380G
  • G1383C
  • T1389A
  • C1395G
  • A1401C
  • A1404G
  • T1407G
  • G1413T
  • G1416A
  • G1419T
  • C1422T
  • A1425C
  • C1428T
  • C1431T
  • C1434A
  • G1441A
Deletions

1671-1812, 1816-1841, 1849-9439
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159T
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T
Deletions

env

env:236-282
Insertions
N/A

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