This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
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Status
LOC_000PEDF.1
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Display Name: Italy/LOC_000PEDF.1/2023-08-11
G. Savini,
F. Monaco,
L. Teodori,
G. Amatori,
M. Marcacci,
F. Valleriani
Submission details
Submission ID
PP104378.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:29:06 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:22
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Istituto Zooprofilattico Sperimentale 'G. Caporale', Viral Foreign Deseases of Animals
Alignment states and QC metrics
Completeness
96.84%
Length
10967
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
480
Total stop codons
0
Total unknown nucs
287
Sample details
Collection subdivision level 1
Veneto
Collection country
Italy
Collection date
2023-08-11
Isolate name
TE.19712.2.2
Host
Host name scientific
Culex pipiens
Host taxon id
7175
INSDC
INSDC accession
PP104378.1
NCBI release date
2024-02-02
NCBI update date
2024-02-02
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
A
156
T
G
168
A
T
195
A
C
210
T
G
219
A
T
234
C
C
282
T
G
354
A
G
447
T
T
477
C
C
483
T
G
492
A
G
495
T
T
510
C
C
561
T
C
600
T
T
606
C
A
630
G
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Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NS1
NS1:
A
70
S
NS2A
NS2A:
R
122
H
NS3
NS3:
T
356
I
NS4A
NS4A:
A
85
V
NS4B
NS4B:
E
249
D
NS5
NS5:
K
432
R
env
env:
R
93
K
env:
I
126
T
env:
V
159
I
env:
L
167
F
Deletions
None
Insertions
None
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