This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000PDTM.1
Download
Download FASTA
Download metadata TSV
Turkmenistan/LOC_000PDTM.1/1973
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1973
Earliest release date
2016-12-07
Sampling location
Turkmenistan
Isolate name
K168_40
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L
KX013456.1
INSDC accession M
KX013457.1
INSDC accession S
KX013458.1
Host
Host
ticks (Ixodoidea)
Submission details
Submission ID
KX013456.1.L/KX013457.1.M/KX013458.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-07 12:47:52 UTC
Date released
2026-07-07 12:51:35 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PDTM.1.embl
Alignment and QC
Total SNPs L
1610
Total inserted nucs L
47
Total deleted nucs L
1
Length L
12131 (99.8%)
Total SNPs M
633
Total inserted nucs M
1
Total deleted nucs M
12
Length M
5322 (99.4%)
Total SNPs S
220
Total inserted nucs S
1
Total deleted nucs S
1
Length S
1631 (97.5%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
35
G
G
43
C
C
48
T
A
50
C
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
C
85
T
A
91
G
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
T
151
C
Show more
M
T
67
C
T
68
C
T
71
C
T
72
C
G
76
A
A
80
G
T
83
C
G
84
A
C
85
T
T
86
C
A
88
G
T
91
C
T
98
C
T
105
C
A
107
G
A
112
G
A
117
G
C
119
T
Show more
S
T
48
C
G
54
A
A
61
G
C
64
T
G
67
A
T
79
C
G
99
A
A
118
G
T
127
C
C
142
T
T
157
C
C
166
T
C
178
A
T
182
C
C
187
T
G
190
A
G
196
A
T
199
C
Show more
Deletions
L
12000
M
5213, 5289-5299
S
1626
Insertions
L
ins_66:CC, ins_11931:GT, ins_12045:CTATTTTAGTGCAATTCTTTCAACCATTAGT, ins_12108:GTGGGGGGAGAA
M
ins_5169:G
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
Y
GPC:
E
19
G
GPC:
S
23
L
GPC:
E
26
G
GPC:
R
28
E
GPC:
D
33
N
GPC:
T
34
A
GPC:
M
35
V
GPC:
P
38
S
GPC:
G
39
S
GPC:
D
40
N
GPC:
N
41
S
GPC:
P
42
Q
GPC:
P
46
S
GPC:
V
48
A
GPC:
S
49
R
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
E
161
D
NP:
H
195
R
NP:
D
199
E
NP:
K
208
N
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
P
321
S
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
Q
74
K
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
T
165
M
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
T
200
A
RdRp:
S
205
P
RdRp:
N
206
Y
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue