This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDTM.1

Display Name: LOC_000PDTM.1
Y.-Y. Hsu, S.-H. Kung, R.-L. Kuo & W.-T. Liu

Sample details

Collection date (upper bound)
2001-07-24
Earliest release date
2001-07-24

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 16:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Yang-Ming University, Institute of Biotechnology

INSDC

NCBI release date
2001-07-24

Alignment and QC metrics

Length
408
Total SNPs
94
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
5.50%

Submission details

Submission ID
AY039005.1.CV-A16
Submitting group
Date submitted
2025-11-28 16:34:59 UTC
Date released
2025-11-28 16:39:29 UTC

Clade

Clade CV-A16
B1a

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T3360A
  • T3366C
  • T3375C
  • A3380T
  • C3390T
  • T3393C
  • T3396C
  • C3399T
  • T3400C
  • G3402T
  • C3405T
  • G3408T
  • C3411T
  • C3423A
  • T3426C
  • T3427C
  • A3429T
  • A3432T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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