This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDH7.1

USA/LOC_000PDH7.1/2008-08-18
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2008-08-18
Earliest release date
2019-01-20
Sampling location
USA (Antioch,California)
Isolate name
WNV/bird/Antioch_CA_USA/2008-08-18/W130

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-23 00:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507712.1
Submitting group
Date submitted
2026-02-23 00:20:09 UTC
Date released
2026-02-23 00:31:48 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
62
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • A673G
  • T1442C
  • C1465T
  • T1656C
  • T2421C
  • C2466T
  • C2692T
  • T2832C
  • G2979A
  • G3471A
  • C3570T
  • G3708T
  • T3792C
  • C3984T
  • C4107T
  • A4146G
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS4A

  • NS4A:I3V

    • NS5

  • NS5:T641K

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:T70A
    • Deletions
    N/A
    Insertions
    N/A

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