This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDH7.1

China/LOC_000PDH7.1/2017
Y. Zhang, S. Shen, Y. Fang, J. Liu, Z. Su, J. Liang, Z. Zhang, Q. Wu, C. Wang, A. Abudurexiti, Z. Hu, F. Deng, Y. H. Fang, Y. F. Zhang, J. L. Liu, Z. Y. Su, J. H. Liang, Q. L. Wu, Q. G. Wang, Z. H. Hu & Y. J. Zhang

Wuhan Institute of Virology, Chinese Academy of Sciences, State Key Laboratory of Virology

Sample details

Collection date
2017
Earliest release date
2019-09-21
Sampling location
China
Isolate name
FK16116

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-09-21
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
MG659725.1.L/MG659726.1.M/MG659727.1.S
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M segment
624
Total inserted nucs M segment
4
Total deleted nucs M segment
12
Length M segment
5341 (98%)
Variant M segment
False
Total SNPs S segment
309
Total inserted nucs S segment
37
Total deleted nucs S segment
12
Length S segment
1813 (99%)
Variant S segment
False
Total SNPs L segment
1711
Total inserted nucs L segment
461
Length L segment
12568 (100%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T10C
  • G23T
  • G32A
  • A35G
  • C37T
  • G43T
  • T49C
  • T52A
  • C59T
  • C63G
  • C64T
  • T65C
  • T66C
  • T68C
  • G69A
  • G71C
  • C85T
  • G88A

M segment

  • A53G
  • T54C
  • G65A
  • T67C
  • G72A
  • C73T
  • A76G
  • T78C
  • G80A
  • C82T
  • A84G
  • T94C
  • A108G
  • T116C
  • C118T
  • T122C
  • A127G
  • G132A

S segment

  • T16A
  • C31G
  • T63C
  • C66T
  • A83G
  • A84G
  • A93G
  • A98T
  • A102G
  • T128A
  • C144T
  • G153A
  • T156C
  • T166C
  • A173G
  • G174A
  • G180A
  • A186G
Deletions

M segment

5285-5296

S segment

1653-1664
Insertions

L segment

ins_11925:GT, ins_12062:CCCAACCGCTAGTCAAC, ins_12091:GCTGTTTACATCCGTCTCATTATTTCCGTTTTATTATTTCTGGGGTGTGGGGGGAACGATTTCTCCTCACTTACTCCG, ins_12108:GATCTCGGAATGGACCCCAACTGCTCCTGCTCCACCGGCGGCTCCTGCACTTGCACCAGCTCCTGCGCCTGCAAGAACTGCAAGTGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCTGCCGGATGTGAGAAGTGTGCCAAGGACTGTGTGTGCAAAGGTGAAGAGGGGGCCAAGGCAGAGGCCGAGAAATGCAGCTGCTGCCAGTGAGGACCCAGACCCTCCCACACAGCCTATGTAA...

M segment

ins_0:CTC, ins_5166:A

S segment

ins_0:GGGCTGTGCGGCAACGATATCTTTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:F10L
  • GPC:C15Y
  • GPC:K19G
  • GPC:N21H
  • GPC:P23S
  • GPC:N31K
  • GPC:H33D
  • GPC:V34A
  • GPC:M35V
  • GPC:P38S
  • GPC:D39S
  • GPC:P44S
  • GPC:S49R
  • GPC:A51T
  • GPC:L52Q
  • GPC:P58S
  • GPC:S64T

NP

  • NP:K15R
  • NP:Y20F
  • NP:F30Y
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:K119N
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A307V
  • NP:Y315H
  • NP:T320S
  • NP:E322D
  • NP:Q405L
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:L103I
  • RdRp:I114V
  • RdRp:R156K
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:D212E
Deletions
N/A
Insertions
N/A

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