This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000PDEE.1
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Download FASTA
Download metadata TSV
Display Name: United_Arab_Emirates/LOC_000PDEE.1/2019
J. V. Camp,
P. Weidinger,
S. Ramaswamy,
D. O. Kannan,
B. M. Osman,
J. Kolodziejek,
N. Karuvantevida,
A. Abou Tayoun,
T. Loney,
N. Nowotny &
N. Wolf
Sample details
Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Earliest release date
2022-02-22
Collection country
United Arab Emirates
Collection subdivision level 1
Al Ain
Isolate name
UAE/CT219M3/2019
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-12 15:10
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Medical University of Vienna, Center for Virology
INSDC
NCBI release date
2022-02-22
INSDC accession L
MW548504.1
INSDC accession S
MW548494.1
Host
Host taxon id
34626
Host name scientific
Hyalomma dromedarii
Alignment and QC metrics S
Length S
1663
Total SNPs S
204
Total inserted nucs S
3
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.28%
Alignment and QC metrics L
Length L
12122
Total SNPs L
1658
Total inserted nucs L
42
Total deleted nucs L
24
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
1
Frame shifts L
RdRp:764-766(nt:2364-2374)
Completeness L
99.97%
Submission details
Submission ID
MW548504.1.L/MW548494.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-12 15:10:31 UTC
Date released
2025-09-12 15:15:01 UTC
Files
Annotations
LOC_000PDEE.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
10
C
L:
G
23
T
L:
T
24
A
L:
G
32
T
L:
A
35
G
L:
A
40
T
L:
G
41
A
L:
G
43
C
L:
C
59
G
L:
A
73
G
L:
A
91
G
L:
G
98
A
L:
G
112
A
L:
T
131
A
L:
A
147
G
L:
T
151
C
L:
T
154
C
L:
T
160
C
Show more
S
S:
G
54
A
S:
C
64
T
S:
A
66
G
S:
G
67
A
S:
T
79
C
S:
C
82
T
S:
A
109
G
S:
G
134
A
S:
T
135
C
S:
G
136
A
S:
A
148
T
S:
C
166
T
S:
C
178
A
S:
T
181
C
S:
G
184
A
S:
C
187
A
S:
G
190
A
S:
G
196
A
Show more
Deletions
L:49-52, L:2375, L:11922-11928, L:12029-12032, L:12064-12071
Insertions
ins_L:46:C, ins_L:65:GTC, ins_L:2363:A, ins_L:11934:GCAGGTTGA, ins_L:12048:GC, ins_L:12087:A, ins_L:12091:CTTAG, ins_L:12104:ACAAGGGTGTGGG, ins_L:12108:ACGATTT, ins_S:1580:C, ins_S:1594:CA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
K
4
R
NP:
V
27
T
NP:
D
44
E
NP:
V
83
A
NP:
T
124
A
NP:
G
125
S
NP:
A
154
S
NP:
L
179
Q
NP:
D
186
E
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
A
271
T
NP:
D
274
E
NP:
S
301
G
NP:
A
307
P
NP:
K
428
R
NP:
V
436
I
NP:
N
442
S
RdRp
RdRp:
D
8
N
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
T
163
V
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
177
T
RdRp:
S
201
G
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
C
RdRp:
L
216
I
RdRp:
K
219
R
Show more
Deletions
RdRp:767
Insertions
None
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