This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDEE.1

India/LOC_000PDEE.1/2015
P. D. Yadav, A. M. Shete & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2015
Earliest release date
2017-09-06
Sampling location
India
Isolate name
NIV1310776

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession M

Submission details

Submission ID
KT384404.1.M
Submitting group
Date submitted
2026-09-19 07:58:18 UTC
Date released
2026-09-19 08:01:28 UTC

Files

Annotations

Alignment and QC

Total SNPs M
165
Length M
823 (15.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • C126T
  • A128G
  • T137C
  • G143A
  • A146G
  • G147A
  • C153A
  • T155C
  • T159C
  • A169G
  • A170G
  • A174G
  • G175A
  • A185T
  • G189C
  • A192G
  • C193T
  • C194T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:E19K
  • GPC:H21N
  • GPC:S23P
  • GPC:E26G
  • GPC:R28E
  • GPC:K31N
  • GPC:D33H
  • GPC:T34V
  • GPC:G39D
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:S53P
  • GPC:I54V
  • GPC:L56P
  • GPC:T64S
  • GPC:P80S
  • GPC:G85K
Deletions
N/A
Insertions
N/A

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