This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDEE.1

USA/LOC_000PDEE.1/2009-06-23
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2009-06-23
Earliest release date
2019-01-20
Sampling location
USA (Hanford,California)
Isolate name
WNV/bird/Hanford_CA_USA/2009-06-23/W134

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 14:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507716.1
Submitting group
Date submitted
2026-02-21 14:54:02 UTC
Date released
2026-02-21 15:14:05 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
55
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • C870T
  • T1290C
  • A1320G
  • T1442C
  • C1465T
  • T1890G
  • T1971C
  • C1974T
  • C2445T
  • C2466T
  • G2631T
  • C2792T
  • A3394T
  • T3399C
  • T3792C
  • T3844C
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:T108M
  • NS1:T309S

    • NS4A

  • NS4A:A85T

    • NS5

  • NS5:R26K
  • NS5:K314R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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