This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD32.1

Display Name: Turkey/LOC_000PD32.1/2015
M. O. Timurkan & H. Aydin

Sample details

Collection date
2015
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-12-31
Earliest release date
2020-03-28
Collection country
Turkey
Isolate name
TR/ERZINCAN2015/OHE/8/S

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 07:30insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ataturk University, Faculty of Veterinary Medicine, Department of Virology

INSDC

NCBI release date
2020-03-28
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
333
Total SNPs S
55
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
19.92%

Submission details

Submission ID
MT178283.1.S
Submitting group
Date submitted
2025-09-16 07:29:57 UTC
Date released
2025-09-16 07:34:13 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A337G
  • S:A348G
  • S:A349G
  • S:G353T
  • S:A358G
  • S:T364C
  • S:G367A
  • S:C370A
  • S:A379G
  • S:G381A
  • S:T382C
  • S:A386G
  • S:C387T
  • S:T388C
  • S:A394G
  • S:C400T
  • S:C403T
  • S:C406T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:K98R
  • NP:A100S
  • NP:S109N
  • NP:T111V
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:E203K
    • Deletions
    None
    Insertions
    None

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