This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD08.1

Iran/LOC_000PD08.1/2015
S. Chinikar & N. Shahhosseini

Pasteur Institute of Iran

Sample details

Collection date
2015
Earliest release date
2016-09-03
Sampling location
Iran
Isolate name
Chalous-65

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-09-03
INSDC accession S segment

Host

Host

Submission details

Submission ID
KT588640.1.S
Submitting group
Date submitted
2026-07-24 13:47:35 UTC
Date released
2026-07-24 13:49:57 UTC

Clade & Lineage

Closest reference S segment
S11 (MK299338.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
42
Length S segment
419 (24.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MK299338.1 references

Substitutions

S segment

  • C237T
  • A247T
  • T255C
  • T258G
  • G264A
  • A270G
  • T288C
  • T297C
  • T303C
  • T309C
  • A315C
  • T333G
  • C342T
  • G378A
  • T387C
  • A393G
  • G396A
  • G417C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MK299338.1 references

Substitutions

NP

  • NP:T65S
  • NP:E121D
  • NP:E161D
  • NP:S185N
Deletions
N/A
Insertions
N/A

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