This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

Display Name: Tajikistan/LOC_000PCXE.1/2017-07-04
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Submission details

Submission ID
PV390624.1.L/PV390617.1.M/PV390606.1.S
Date submitted
2025-07-11 18:53:07 UTC
Date released
2025-07-11 18:58:25 UTC

Data use terms

Data use terms
OPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

Alignment and QC metrics L

Completeness L
99.60%
Length L
12131
Total ambiguous nucs L
26
Total deleted nucs L
11
Total frame shifts L
0
Total inserted nucs L
57
Total SNPs L
1582
Total unknown nucs L
0

Alignment and QC metrics M

Completeness M
99.27%
Length M
5351
Total ambiguous nucs M
22
Total deleted nucs M
9
Total frame shifts M
0
Total inserted nucs M
11
Total SNPs M
999
Total unknown nucs M
0

Alignment and QC metrics S

Completeness S
99.10%
Length S
1673
Total ambiguous nucs S
15
Total deleted nucs S
3
Total frame shifts S
0
Total inserted nucs S
4
Total SNPs S
197
Total unknown nucs S
0

Sample details

Earliest release date
2025-04-05
Collection country
Tajikistan
Collection date
2017-07-04
Collection date (lower bound)
2017-07-04
Collection date (upper bound)
2017-07-04
Isolate name
CCHFV_B.D.33

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2025-04-05

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A35G
  • L:G43C
  • L:C48T
  • L:T49C
  • L:C59T
  • L:C64T
  • L:T65G
  • L:G71T
  • L:A72T
  • L:C82T
  • L:C85T
  • L:G93A
  • L:A109G
  • L:G112A
  • L:T121C
  • L:T131A
  • L:C136T
  • L:T151C
  • M

  • M:G36T
  • M:T39C
  • M:A42G
  • M:G50A
  • M:A51G
  • M:G56A
  • M:A57C
  • M:G60A
  • M:A61G
  • M:A69G
  • M:T71A
  • M:G76T
  • M:A80G
  • M:T86C
  • M:C96T
  • M:T100C
  • M:T102C
  • M:C103T
  • S

  • S:C38T
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G99A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C160T
  • S:C166T
  • S:C178A
  • S:T182C
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G262A
  • Deletions
    L:11932-11935, L:11974-11978, L:12078, L:12084, M:89, M:5165-5167, M:5273-5277, S:1575, S:1576, S:1617
    Insertions
    ins_S:1584:AAC, ins_S:1612:C, ins_M:5264:TTTTA, ins_M:5170:GGGGG, ins_M:29:T, ins_L:12108:A, ins_L:11987:T, ins_L:12044:TCTATTTTAGTCCA, ins_L:11995:G, ins_L:11924:GTGTG, ins_L:66:CC, ins_L:12055:CAT, ins_L:12104:CAGTTCAATTATTTCTAGGGTGKGGG, ins_L:12062:C, ins_L:11922:T, ins_L:11993:TG

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:L12P
  • GPC:L14P
  • GPC:C15W
  • GPC:G18E
  • GPC:E19G
  • GPC:G22V
  • GPC:S23L
  • GPC:H24L
  • GPC:E26G
  • GPC:R28K
  • GPC:K31R
  • GPC:D33G
  • GPC:T34I
  • NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
  • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:G83D
  • RdRp:L90I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:T200A
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • Deletions
    GPC:172-174, GPC:191, GPC:192
    Insertions
    ins_GPC:164:VPGNA

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