This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCJ6.1

South_Africa/LOC_000PCJ6.1/1981
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1981
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPUD8_81_7_813051_M

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession M

Submission details

Submission ID
MF511236.1.M
Submitting group
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:48:31 UTC

Host

Host

Files

annotations

Alignment and QC

Total SNPs M
234
Total deleted nucs M
1
Length M
5343 (99.6%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • G50A
  • A64G
  • C85T
  • T86C
  • A117G
  • A174G
  • A192G
  • C193T
  • C194T
  • A203T
  • C217T
  • C229A
  • C239T
  • T254C
  • T259C
  • C275T
  • C320T
  • C340T
Deletions

M

5170
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I9V
  • GPC:R28G
  • GPC:T34V
  • GPC:P42L
  • GPC:P46Q
  • GPC:L56P
  • GPC:T83I
  • GPC:G85E
  • GPC:P88S
  • GPC:S90P
  • GPC:P97S
  • GPC:V98A
  • GPC:T100A
  • GPC:T102I
  • GPC:L105S
  • GPC:G108S
  • GPC:P112S
  • GPC:T116A
Deletions
N/A
Insertions
N/A

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