This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCJ6.1

Display Name: India/LOC_000PCJ6.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

Sample details

Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Earliest release date
2021-08-07
Collection country
India
Collection subdivision level 1
Gujarat State, Amreli
Isolate name
MCL-19-H-3154

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute of Virology, Maximum Containment Laboratory

INSDC

NCBI release date
2021-08-07
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
1634
Total SNPs S
206
Total inserted nucs S
2
Total deleted nucs S
1
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
97.67%

Submission details

Submission ID
MW298549.1.S
Submitting group
Date submitted
2025-09-12 15:10:31 UTC
Date released
2025-09-12 15:15:01 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T48C
  • S:A61G
  • S:C64T
  • S:G67A
  • S:A81G
  • S:G99A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G169A
  • S:C178A
  • S:T182C
  • S:C217T
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G262A
    • Deletions
    S:1617
    Insertions
    ins_S:1577:A, ins_S:1612:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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