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LOC_000PCJ6.1
Download
Download FASTA
Download metadata TSV
Kazakhstan/LOC_000PCJ6.1/1971
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1971
Earliest release date
2016-12-07
Sampling location
Kazakhstan
Isolate name
K128_76
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-18 16:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L segment
KX013453.1
INSDC accession M segment
KX013454.1
INSDC accession S segment
KX013455.1
Host
Host
ticks (Ixodoidea)
Submission details
Submission ID
KX013453.1.L/KX013454.1.M/KX013455.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-18 16:40:54 UTC
Date released
2026-05-18 16:44:37 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PCJ6.1.embl
Alignment and QC
Total SNPs M segment
629
Total inserted nucs M segment
1
Total deleted nucs M segment
11
Length M segment
5327 (97.8%)
Total SNPs L segment
1592
Total inserted nucs L segment
35
Length L segment
12120 (99.8%)
Total SNPs S segment
219
Total inserted nucs S segment
5
Length S segment
1641 (90.6%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
T
49
C
G
57
A
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
A
109
G
T
121
C
T
131
A
C
136
T
T
151
C
Show more
M segment
A
47
T
T
61
C
G
65
A
T
67
C
G
72
A
A
76
G
T
78
C
G
80
A
C
82
T
A
84
G
A
86
G
T
94
C
A
100
G
A
108
G
T
116
C
C
118
T
T
122
C
A
127
G
Show more
S segment
T
16
A
C
31
G
G
34
A
A
45
G
C
48
T
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
A
164
G
T
166
C
A
173
G
C
183
T
A
186
G
T
204
C
T
234
A
Show more
Deletions
M segment
5285-5295
Insertions
L segment
ins_66:CC, ins_11931:GT, ins_12108:CACCGCTCATTTCAGTTTGATTATTTCTAGG
M segment
ins_5166:A
S segment
ins_1520:CCCTT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
F
10
L
GPC:
C
15
Y
GPC:
K
19
G
GPC:
N
21
H
GPC:
P
23
S
GPC:
G
26
E
GPC:
N
31
K
GPC:
H
33
N
GPC:
V
34
A
GPC:
M
35
V
GPC:
P
38
S
GPC:
D
39
S
GPC:
V
48
T
GPC:
S
49
R
GPC:
A
51
T
GPC:
P
58
S
GPC:
S
59
P
Show more
NP
NP:
Y
20
F
NP:
N
42
S
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
L
94
M
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
M
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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