This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCCK.1

Turkey/LOC_000PCCK.1/2004
M. Zivcec, M. G. Metcalfe, C. G. Albarino, L. W. Guerrero, S. D. Pegan, C. F. Spiropoulou, E. Bergeron & M. L. Khristova

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2004
Earliest release date
2015-12-23
Sampling location
Turkey
Isolate name
200406546-Turkey

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2015-12-23
INSDC accession M

Host

Host

Submission details

Submission ID
KR864902.1.M
Submitting group
Date submitted
2026-09-14 15:44:56 UTC
Date released
2026-09-14 15:48:04 UTC

Files

Annotations

Alignment and QC

Total SNPs M
1060
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5364 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • T40A
  • G50A
  • A51G
  • T67C
  • T68C
  • A69G
  • T71A
  • G76C
  • A80G
  • G84A
  • C92T
  • T94C
  • T100C
  • T102C
  • C103T
  • A108G
  • A112G
  • T113C
Deletions

M

327-329
Insertions

M

ins_5175:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M1T
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:L17R
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24S
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:M35T
Deletions

GPC

GPC:77
Insertions
N/A

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