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LOC_000PBUM.1
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Download FASTA
Download metadata TSV
USA/UNMC0201/2014-08-15
S. Jr. Freed,
S. Chandler,
S. Uhm,
D. Gurung,
A. Butz,
K. Herzog &
J. R. Fauver
University of Nebraska Medical Center, Omaha, Nebraska
Sample details
Collection date
2014-08-15
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Red Willow)
Isolate name
UNMC0201
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-09 12:53
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
OZ309969.1
Bioproject accession
PRJEB96341
Biosample accession
SAMEA119799703
Host
Host
Culex tarsalis
Submission details
Submission ID
OZ309969.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:10:35 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000PBUM.1.embl
Alignment and QC
Total SNPs
84
Length
10260 (93%)
Amino Acid Mutations from founder clade
2K:
L
15
M
2K:
S
19
G
NS1:
R
205
K
NS1:
I
236
V
NS1:
S
288
R
NS2A:
R
188
K
NS2B:
A
103
V
NS2B:
V
120
I
NS3:
T
249
P
NS3:
I
356
T
NS4A:
V
85
A
NS4B:
F
119
L
NS5:
V
49
I
NS5:
K
177
R
NS5:
K
314
R
capsid:
K
104
R
env:
K
93
R
env:
T
126
I
env:
I
159
A
env:
V
304
I
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
204
T
C
340
T
A
407
G
C
435
T
A
630
G
C
969
T
C
1065
T
C
1170
T
T
1442
C
C
1465
T
G
1662
A
C
1707
T
C
1750
T
G
1876
A
C
2304
T
C
2466
T
T
2898
C
G
3083
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
S
19
G
NS1
NS1:
R
205
K
NS1:
I
236
V
NS1:
S
288
R
NS2A
NS2A:
R
188
K
NS2B
NS2B:
V
120
I
NS4B
NS4B:
F
119
L
NS5
NS5:
V
49
I
NS5:
K
314
R
capsid
capsid:
K
104
R
env
env:
V
159
A
env:
L
167
F
env:
V
304
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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