This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBUM.1

Display Name: France/LOC_000PBUM.1
J. Jacques, H. Moret, D. Minette, N. Jovenin, V. Brodard, G. Deslee, F. Lebargy, J. Motte & L. Andreoletti

Sample details

Collection date (upper bound)
2007-03-21
Earliest release date
2007-03-21
Collection country
France
Collection subdivision level 1
Champagne ardennes
Isolate name
FR-03-2003-69

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Jacques J., Laboratoire De Virologie, UFR de medecine, 51 rue cognacq jay, Reims, 51095

INSDC

NCBI release date
2007-03-21
NCBI update date
2016-07-14
INSDC accession

Alignment and QC metrics

Length
318
Total SNPs
52
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
1
Total unknown nucs
0
Total frame shifts
0
Completeness
4.28%
Total stop codons
0

Submission details

Submission ID
AM492417.1
Submitting group
Date submitted
2025-12-24 08:53:43 UTC
Date released
2025-12-24 08:54:53 UTC

Clade

Clade EV-A71
C1

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • C2585G
  • C2588G
  • T2593C
  • C2594T
  • T2600A
  • G2603A
  • G2606A
  • T2618C
  • T2636A
  • C2651T
  • A2654G
  • T2657C
  • A2669G
  • C2675T
  • T2678C
  • C2690T
  • A2699G
  • C2702G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:I52T
  • VP1:K98E
  • VP1:R145E
    • Deletions
    None
    Insertions
    None

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