This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBUM.1

USA/LOC_000PBUM.1/2013-11-07
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2013-11-07
Earliest release date
2019-01-20
Sampling location
USA (Santee,California)
Isolate name
WNV/bird/Santee_CA_USA/2013-11-07/W059

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-18 12:55insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507654.1
Submitting group
Date submitted
2026-03-18 12:54:31 UTC
Date released
2026-03-18 13:10:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
74
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:R205K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:N485S
  • NS4A:V85A
  • NS4B:F17L
  • NS4B:F119L
  • NS5:T25N
  • NS5:S152T
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • C292T
  • A459G
  • A630G
  • C660T
  • C762T
  • T850C
  • C870T
  • T1442C
  • C1465T
  • A1527G
  • C2080T
  • A2205G
  • T2259C
  • C2466T
  • C2652T
  • C2961T
  • G3083A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:R205K

NS3

  • NS3:N485S

NS4B

  • NS4B:F17L
  • NS4B:F119L

NS5

  • NS5:T25N
  • NS5:S152T

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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