This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBUM.1

USA/LOC_000PBUM.1/2013-11-07
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2013-11-07
Earliest release date
2019-01-20
Sampling location
USA (San_Diego,California)
Isolate name
WNV/bird/San_Diego_CA_USA/2013-11-07/W060

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-23 00:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507655.1
Submitting group
Date submitted
2026-02-23 00:20:09 UTC
Date released
2026-02-23 00:30:39 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
78
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A270G
  • A630G
  • A654G
  • C660T
  • A698T
  • C882T
  • A1044G
  • C1047T
  • A1320G
  • T1442C
  • C1465T
  • C1473T
  • C1599T
  • T1762C
  • C1926T
  • C1974T
  • C2061T
  • C2466T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:S9N

    • NS2A

  • NS2A:H119Y
  • NS2A:I142M

    • NS4A

  • NS4A:A85T

    • NS4B

  • NS4B:V51I
  • NS4B:F86L

    • NS5

  • NS5:G129E
  • NS5:K314R

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:Y78F
    • Deletions
    N/A
    Insertions
    N/A

    Report an issue with this sequence or metadata

    Create GitHub issue