This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBUM.1

South_Africa/LOC_000PBUM.1/1981
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1981
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPUD8_81_7_813051_L

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession L segment

Submission details

Submission ID
MF511202.1.L
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L segment
898
Total inserted nucs L segment
50
Total deleted nucs L segment
1
Length L segment
12145 (99.9%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • G32A
  • C37T
  • T49C
  • T55C
  • C63G
  • C64T
  • T65C
  • T67G
  • T70C
  • A74G
  • G93A
  • C100T
  • T118C
  • T154C
  • T157C
  • T160C
  • T163C
  • T202C
Deletions

L segment

12066
Insertions

L segment

ins_11928:TG, ins_12087:CT, ins_12108:TTCATCATCATTATTATTGTTATTATTTTAGGGTGTGGGGGGAACG

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:R80K
  • RdRp:T165K
  • RdRp:A202T
  • RdRp:N206Y
  • RdRp:K492R
  • RdRp:F495Y
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:L765P
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:D771E
  • RdRp:P774L
  • RdRp:N779S
  • RdRp:I783T
  • RdRp:H786Y
Deletions
N/A
Insertions
N/A

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