This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBUM.1

South_Africa/LOC_000PBUM.1/1985
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1985
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPU94_85_813055_S

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-19 17:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession S

Submission details

Submission ID
MF511221.1.S
Submitting group
Date submitted
2026-03-19 17:24:57 UTC
Date released
2026-03-19 17:29:48 UTC

Host

Host

Lineage

Segment S Lineage
II

Files

Annotations

Alignment and QC

Total SNPs S
278
Total inserted nucs S
1
Total ambiguous nucs S
1
Length S
1662 (99.3%)
Variant S
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T39C
  • A50G
  • G54A
  • A61G
  • C64T
  • G67A
  • A78C
  • A81G
  • A85G
  • A109G
  • A118G
  • G122A
  • A124C
  • A130T
  • T144A
  • C154T
  • T157C
  • C166T
Deletions
N/A
Insertions

S

ins_1581:C

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:N8T
  • NP:N9S
  • NP:G23S
  • NP:F30Y
  • NP:D116G
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:N221D
  • NP:I246V
  • NP:D266E
  • NP:R270K
  • NP:S275K
  • NP:I277V
  • NP:S301G
  • NP:A307P
  • NP:Y311F
Deletions
N/A
Insertions
N/A

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