This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBUM.1

South_Africa/LOC_000PBUM.1/1985
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1985
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPU94_85_813055_L

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-20 13:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession L segment

Host

Host

Submission details

Submission ID
MF511204.1.L
Submitting group
Date submitted
2026-04-20 13:49:12 UTC
Date released
2026-04-20 13:53:53 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
2015
Total inserted nucs L segment
29
Total deleted nucs L segment
9
Total ambiguous nucs L segment
1
Length L segment
12128 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T10C
  • G23T
  • G32A
  • A35G
  • A36G
  • C37G
  • A40G
  • G43C
  • C48T
  • G57C
  • C59T
  • T61A
  • C63G
  • T65C
  • G71T
  • A72G
  • A73G
  • C82A
Deletions

L segment

12027-12035
Insertions

L segment

ins_61:C, ins_11947:GA, ins_12092:TTTGATTATTTCCGGGGTGTGGGGGG

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:D2E
  • RdRp:S6N
  • RdRp:A14T
  • RdRp:S19T
  • RdRp:S67A
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:E87D
  • RdRp:I114V
  • RdRp:I131L
  • RdRp:T163A
  • RdRp:R166K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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