This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBUM.1

Turkey/LOC_000PBUM.1/2004
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2004
Earliest release date
2017-09-06
Sampling location
Turkey
Isolate name
Tur_2004_813153_L

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-30 18:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession L segment

Submission details

Submission ID
MF511200.1.L
Submitting group
Date submitted
2026-03-30 18:11:55 UTC
Date released
2026-03-30 18:15:46 UTC

Host

Host

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
1312
Total inserted nucs L segment
42
Total ambiguous nucs L segment
2
Length L segment
12134 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • G23T
  • A35G
  • A42T
  • G43C
  • C48T
  • T49C
  • A53G
  • T58C
  • C59T
  • C63T
  • C64G
  • T66C
  • A72G
  • A73T
  • A91G
  • G93A
  • C100T
  • C107A
Deletions
N/A
Insertions

L segment

ins_67:C, ins_11928:CG, ins_12094:ACTCACTCCAGTTTCATTATTTGAAGGGTGTGGGGGGAA

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:Q11K
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223M
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:H333Y
  • RdRp:V352I
Deletions
N/A
Insertions
N/A

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