This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAGD.1

Display Name: Malaysia/LOC_000PAGD.1/2000
D. Perera, M. A. Yusof, Y. Podin, M. H. Ooi, N. T. Thao, K. K. Wong, A. Zaki, K. B. Chua, Y. A. Malik, P. V. Tu, N. T. Tien, P. Puthavathana, P. C. McMinn & M. J. Cardosa

Sample details

Collection date
2000
Collection date (lower bound)
2000-01-01
Collection date (upper bound)
2000-12-31
Earliest release date
2007-05-23
Collection country
Malaysia
Collection subdivision level 1
Peninsular Malaysia
Isolate name
UM15985/MAL/00

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-09 17:50insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Cardosa M.J., Universiti Malaysia Sarawak, Institute of Health & Community Medicine, Kota Samarahan, Sarawak, 94300

INSDC

NCBI release date
2007-05-23
NCBI update date
2016-07-23
INSDC accession

Alignment and QC metrics

Length
891
Total SNPs
213
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
12.02%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
AM292482.1
Submitting group
Date submitted
2025-12-09 17:50:26 UTC
Date released
2025-12-09 17:52:35 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454T
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2496C
  • T2499C
  • G2500T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
    • Deletions
    None
    Insertions
    None

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