This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAGD.1

Display Name: France/LOC_000PAGD.1/2021-10
K. S. Benschop, J. Albert, A. Anton, C. Andres, M. Aranzamendi, B. Armannsdottir, J. L. Bailly, F. Baldanti, G. E. Baldvinsdottir, S. Beard, N. Berginc, S. Bottcher, S. Blomqvist, L. Bubba, C. Calvo, M. Cabrerizo, A. Cavallero, C. Celma, F. Ceriotti, I. Costa, S. Cottrell, M. Del Cuerpo, J. Dean, J. L. Dembinski, ..., M. Bisseux

Sample details

Collection date
2021-10
Collection date (lower bound)
2021-10-01
Collection date (upper bound)
2021-10-31
Earliest release date
2022-09-06
Collection country
France
Collection subdivision level 1
ARA
Isolate name
CF_568006_FRA_2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 09:54insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
CHU Clermont-Ferrand, Centre National de reference des enterovirus et parechovirus

INSDC

NCBI release date
2022-09-06
NCBI update date
2022-09-06
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7384
Total SNPs
893
Total inserted nucs
54
Total deleted nucs
36
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.99%
Total stop codons
0

Submission details

Submission ID
OP267500.1
Submitting group
Date submitted
2025-12-17 09:54:19 UTC
Date released
2025-12-17 10:05:00 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T11C
  • C12T
  • T61C
  • C62T
  • A88T
  • T89C
  • C95T
  • C101T
  • C106T
  • A119G
  • C122T
  • A126G
  • A140G
  • T158C
  • T172C
  • G197A
  • C203T
  • T222C
    • Deletions
    619, 691-725
    Insertions
    ins_28:C, ins_7367:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    2A

  • 2A:I22T
  • 2A:V37I
  • 2A:R65K
  • 2A:N84S
  • 2A:A99V
  • 2A:V144A

    • 2B

  • 2B:I64V

    • 2C

  • 2C:K58N
  • 2C:R72Q
  • 2C:S98A
  • 2C:A102M
  • 2C:N273G
  • 2C:T275A
  • 2C:T277V
  • 2C:V304I

    • 3A

  • 3A:A13T
  • 3A:V53L

    • 3C

  • 3C:I46T
  • 3C:N50D
  • 3C:C93Y

    • 3D

  • 3D:N6S
  • 3D:M11V
  • 3D:S41P
  • 3D:N95S
  • 3D:E101D
  • 3D:Q130H
  • 3D:T200I
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:I360V
  • 3D:K452R

    • VP1

  • VP1:S1I
  • VP1:N2D
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E
  • VP1:E169K
  • VP1:N218T

    • VP2

  • VP2:S59A
  • VP2:S73A
  • VP2:N74T
  • VP2:Y98H
  • VP2:D136N
  • VP2:N144D
  • VP2:R151A
  • VP2:I167L
  • VP2:V195A
  • VP2:V211I
  • VP2:V225M

    • VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:I47V
  • VP3:D59E
  • VP3:G60S
  • VP3:N62V
  • VP3:R68K
  • VP3:V73A
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:S180N

    • VP4

  • VP4:I18V
    • Deletions
    None
    Insertions
    None

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