This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAGD.1

Russia/LOC_000PAGD.1/2007
A. Volynkina, A. Burlachenko, Y. Lisitskaya & E. Kotenev

Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

Sample details

Collection date
2007
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
7-STV/HU-2007

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-06-01
INSDC accession L
INSDC accession S

Host

Host

Submission details

Submission ID
KR821977.1.L/KR815298.1.S
Submitting group
Date submitted
2026-07-16 11:49:04 UTC
Date released
2026-07-16 11:51:19 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs L
45
Length L
437 (3.61%)
Total SNPs S
84
Length S
538 (32.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T131A
  • C148T
  • T151C
  • T154C
  • T160C
  • T163C
  • T202C
  • T218C
  • T229C
  • A240C
  • T241C
  • T253C
  • T254A
  • G264A
  • C265T
  • A268G
  • C276T
  • C284A

S

  • C115T
  • A121G
  • G134A
  • C139T
  • C142T
  • T157C
  • C166T
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
  • G189A
  • T199C
  • C217T
  • C244T
  • T250G
  • G262A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E

RdRp

  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:S95T
Deletions
N/A
Insertions
N/A

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