This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAGD.1

Display Name: Spain/LOC_000PAGD.1/2018
Baz-Flores, S.; Herrero, G.; Cuadrado-Matias, R.; Moraga Fernandez, A.; Peralbo-Moreno, A.; Fernandez de Mera, I. G.; Ruiz-Fons, F.

Submission details

Submission ID
PP449384.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Instituto de Investigacion en Recursos Cinegeticos, Sanidad Animal

Alignment and QC metrics S

Completeness S
10.53%
Length S
176
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
33
Total unknown nucs S
0

Sample details

Earliest release date
2024-03-16
Collection country
Spain
Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Isolate name
269

Host

Host name scientific
Hyalomma lusitanicum
Host taxon id
49205

INSDC

INSDC accession S
PP449384.1
NCBI release date
2024-03-16

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:A379G
  • S:G381A
  • S:T382C
  • S:A386G
  • S:A394G
  • S:C400T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:W133R
    • Deletions
    None
    Insertions
    None

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