This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAGD.1

Display Name: Turkey/LOC_000PAGD.1/2016-07-01
D. A. Bente & G. Akyildiz

Sample details

Collection date
2016-07-01
Collection date (lower bound)
2016-07-01
Collection date (upper bound)
2016-07-01
Earliest release date
2020-05-04
Collection country
Turkey
Isolate name
nymph1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Texas Medical Branch, Microbiology & Immunology

INSDC

NCBI release date
2020-05-04
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma aegyptium

Alignment and QC metrics S

Length S
211
Total SNPs S
39
Total inserted nucs S
0
Total deleted nucs S
1
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
1
Frame shifts S
NP:71-483(nt:264-1504)
Completeness S
12.68%

Submission details

Submission ID
MN864494.1.S
Submitting group
Date submitted
2025-09-16 19:41:39 UTC
Date released
2025-09-16 19:45:28 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A268C
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:C370T
  • S:A375G
    • Deletions
    S:263
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions
    Deletions
    NP:70
    Insertions
    None

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