This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
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Status
LOC_000PAAR.1
Download FASTA
Display Name: United_Kingdom/LOC_000PAAR.1/2022-11-01
M. Schilling,
B. Dunkel,
T. Floyd,
D. Hicks,
A. Nunez,
F. Steinbach,
A.J. Folly,
N. Johnson
Submission details
Submission ID
OQ857020.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:28:36 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:22
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Animal and Plant Health Agency, Virology
Alignment states and QC metrics
Completeness
5.66%
Length
624
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
32
Total stop codons
0
Total unknown nucs
0
Sample details
Collection country
United Kingdom
Collection date
2022-11-01
Isolate name
WNV-SC-2022-08
Host
Host name scientific
Equus caballus
Host taxon id
9796
INSDC
INSDC accession
OQ857020.1
NCBI release date
2024-04-25
NCBI update date
2024-04-25
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
C
8106
T
C
8130
T
C
8220
T
T
8235
C
G
8247
A
G
8271
A
A
8277
G
G
8292
A
C
8296
T
C
8301
T
T
8340
C
G
8346
A
T
8373
C
T
8382
C
C
8388
T
C
8400
T
A
8403
G
A
8409
G
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Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NS5
NS5:
K
280
R
Deletions
None
Insertions
None
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