This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PA9T.1

Display Name: Taiwan/LOC_000PA9T.1
C. H. Chen, M. T. Wan & J. W. Tsai

Sample details

Collection date (upper bound)
2005-09-06
Earliest release date
2005-09-06
Collection country
Taiwan
Isolate name
C19

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 16:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Tatung University, Bioengineering

INSDC

NCBI release date
2005-09-06

Alignment and QC metrics

Length
402
Total SNPs
35
Total inserted nucs
4
Total deleted nucs
42
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
5.94%

Submission details

Submission ID
DQ167562.1.CV-A16
Submitting group
Date submitted
2025-11-28 16:34:59 UTC
Date released
2025-11-28 16:39:29 UTC

Clade

Clade CV-A16
B1

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C180T
  • C194T
  • C201A
  • A203C
  • A205T
  • G226A
  • A227G
  • C236T
  • C242T
  • G263A
  • A276G
  • A287G
  • C339T
  • T342A
  • G360A
  • T385C
  • G386A
  • C399T
    • Deletions
    132-171, 208, 214
    Insertions
    ins_177:C, ins_203:GT, ins_560:T

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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