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LOC_000PA8V.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_000PA8V.1/1965
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1965
Earliest release date
2017-04-02
Sampling location
Pakistan
Isolate name
UCCR4413
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-07 16:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484039.1
INSDC accession M
KY484038.1
INSDC accession S
KY484037.1
Submission details
Submission ID
KY484039.1.L/KY484038.1.M/KY484037.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-07 16:45:43 UTC
Date released
2026-04-07 16:52:30 UTC
Host
Host
Hyalomma anatolicum
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000PA8V.1.embl
Alignment and QC
Total SNPs L
1635
Total inserted nucs L
60
Total deleted nucs L
1
Length L
12167 (100%)
Variant L
False
Total SNPs M
1479
Total inserted nucs M
43
Total deleted nucs M
83
Length M
5326 (100%)
Variant M
False
Total SNPs S
218
Total inserted nucs S
1
Length S
1673 (100%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
C
37
T
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M
G
38
A
T
39
A
A
42
G
G
50
A
A
51
G
A
52
C
G
55
A
A
57
G
T
58
A
T
59
G
G
60
A
A
61
G
G
62
A
T
67
C
T
68
G
A
69
T
A
70
T
T
71
A
Show more
S
A
50
G
G
54
A
G
67
A
T
79
C
A
81
G
G
99
A
A
109
G
A
118
G
C
166
T
G
169
A
G
171
A
T
172
C
C
178
A
T
182
C
G
190
A
G
196
A
T
199
C
C
208
T
Show more
Deletions
L
12034
M
396-407, 5244-5248, 5293-5358
Insertions
L
ins_58:T, ins_11917:CA, ins_12054:TACAATTTT, ins_12083:ACTATTC, ins_12096:GTTCATGTCCATTTTATTATTTCTGGGGTGTGGGGGGAACG
M
ins_137:AAA, ins_236:CCC, ins_323:CTCCTCCTCCCGACC, ins_564:GAC, ins_5063:GGG, ins_5178:AGTTTTGTTAATGCCT
S
ins_1584:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
L
GPC:
H
2
Y
GPC:
I
3
A
GPC:
S
4
L
GPC:
M
6
A
GPC:
Y
7
S
GPC:
C
11
H
GPC:
L
12
Q
GPC:
Q
13
H
GPC:
C
15
Y
GPC:
G
16
K
GPC:
L
17
V
GPC:
E
19
A
GPC:
T
20
D
GPC:
H
21
T
GPC:
G
22
Q
GPC:
H
24
P
GPC:
N
25
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
S
39
N
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
K
208
M
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
GPC
GPC:123-131
Insertions
GPC
ins_GPC:22:KPTVRTNTTHKI, ins_GPC:165:P, ins_GPC:1660:S
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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