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LOC_000PA8V.1
Download
Download FASTA
Download metadata TSV
China/LOC_000PA8V.1/1968
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1968
Earliest release date
2017-04-02
Sampling location
China
Isolate name
UCCR4459
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-20 13:49
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L segment
KY484033.1
INSDC accession M segment
KY484032.1
INSDC accession S segment
KY484031.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma marginatum)
Submission details
Submission ID
KY484033.1.L/KY484032.1.M/KY484031.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-20 13:49:12 UTC
Date released
2026-04-20 13:53:53 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PA8V.1.embl
Alignment and QC
Total SNPs S segment
219
Total inserted nucs S segment
16
Total deleted nucs S segment
1
Length S segment
1672 (91.7%)
Total SNPs L segment
1607
Total inserted nucs L segment
60
Length L segment
12168 (100%)
Total SNPs M segment
1039
Total inserted nucs M segment
5
Length M segment
5367 (98.3%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
C
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
125
C
T
131
A
C
136
T
T
139
C
Show more
M segment
T
25
C
G
46
T
A
47
G
G
52
A
A
53
C
T
63
C
G
65
A
A
66
G
T
67
A
A
76
G
C
77
T
T
78
C
G
80
T
C
82
T
A
84
G
C
88
T
C
92
T
T
94
C
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
165
C
T
166
C
A
173
G
C
183
T
A
186
G
G
216
A
Show more
Deletions
S segment
1600
Insertions
L segment
ins_58:T, ins_11925:GT, ins_12059:TTCTCACAA, ins_12083:GCTATTT, ins_12096:GTTTATATCAGTTTCATTATTTCCAGGGTGTGGGGGGAACG
M segment
ins_0:TCTC, ins_5165:A
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
F
10
L
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
K
19
G
GPC:
T
20
S
GPC:
N
21
H
GPC:
P
23
L
GPC:
H
24
S
GPC:
G
26
K
GPC:
E
28
Q
GPC:
N
30
S
GPC:
H
33
S
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NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
125
G
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
S
223
L
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
Y
17
H
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
V
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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