This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PA8V.1

USA/LOC_000PA8V.1/2007-10-02
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2007-10-02
Earliest release date
2019-01-20
Sampling location
USA (Lakeside,California)
Isolate name
WNV/bird/Lakeside_CA_USA/2007-10-02/W001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 14:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507608.1
Submitting group
Date submitted
2026-02-21 14:54:02 UTC
Date released
2026-02-21 15:14:05 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
48
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T339C
  • A630G
  • C660T
  • C858T
  • C1317T
  • T1442C
  • C1465T
  • T1821C
  • G2257A
  • C2466T
  • C3570T
  • C4107T
  • A4146G
  • T4212C
  • C4272T
  • C4323T
  • G4452A
  • G4525T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2B

  • NS2B:V103F

    • NS5

  • NS5:K314R
  • NS5:E390G

    • env

  • env:V159A
  • env:L167F
  • env:V431I
    • Deletions
    N/A
    Insertions
    N/A

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