This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Spain/unavailable/2021-08-17
C. S. Casimiro-Soriguer, J. Perez-Florido, J. L. Fernandez-Rueda, I. Pedrosa-Corral, V. Guillot-Sulay, N. Lorusso, L. J. Martinez-Gonzalez, J. M. Navarro-Mari, J. Dopazo, S. Sanbonmatsu-Gamez, E. A. Robles, M. Lara, A. Aguado, M. A. Rodriguez Iglesias, J. A. Lepe, F. Garcia, M. Perez-Alegre, E. Andujar, V. E. Jimenez, L. P. Camino, N. Loruso, U. Ameyugo, I. M. Vazquez, C. M. Lozano & J. A. Chaves

Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

Sample details

Collection date
2021-08-17
Earliest release date
2025-08-01
Sampling location
Spain
Isolate name
unavailable

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-08-01
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Submission details

Submission ID
OZ294943.1
Date submitted
2026-03-15 20:25:42 UTC
Date released
2026-03-15 21:02:00 UTC

Lineage

Lineage
1A

Files


Alignment and QC

Total SNPs
485
Total inserted nucs
1
Length
10847 (98.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A70S
  • NS1:K170R
  • NS2A:G211R
  • NS3:A177V
  • NS3:T436A
  • NS4B:E249D
  • NS5:K41R
  • NS5:K177R
  • NS5:R422K
  • capsid:A52T
  • capsid:L117M
  • env:K93R
  • env:V206A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C381T
  • C445A
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
Deletions
N/A
Insertions

ins_10492:A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S
  • NS1:K170R

NS2A

  • NS2A:G211R

NS2B

  • NS2B:V103A

NS3

  • NS3:A177V
  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:K41R
  • NS5:R422K

capsid

  • capsid:A52T
  • capsid:L117M

env

  • env:I126T
  • env:V159I
  • env:L167F
  • env:V206A
Deletions
N/A
Insertions
N/A

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