This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PA7X.1

Nigeria/LOC_000PA7X.1/1996
J. W. Koehler, K. L. Delp, B. J. Kearney, T. A. Conrad, R. J. Schoepp, A. R. Garrison, L. A. Altimura, C. A. Rossi & T. D. Minogue

USAMRIID, DSD

Sample details

Collection date
1996
Earliest release date
2017-04-02
Sampling location
Nigeria
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-25 15:11insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-04-02
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
KY484034.1.L/KY484035.1.M/KY484036.1.S
Submitting group
Date submitted
2026-03-25 15:11:29 UTC
Date released
2026-03-25 15:17:08 UTC

Host

Host

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs L
17
Total inserted nucs L
52
Length L
12160 (100%)
Variant L
False
Total SNPs M
4
Length M
5366 (100%)
Variant M
False
Total SNPs S
1
Length S
1672 (100%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C1495T
  • A1879G
  • G3216A
  • C4117A
  • C5054A
  • T5065A
  • C5100A
  • C5798T
  • A5830T
  • T5875C
  • G8896A
  • G9764A
  • A12099T
  • T12100C
  • C12101A
  • G12105C
  • A12108C

M

  • G693T
  • A1142C
  • A2923C
  • G3565A

S

  • G1661A
Deletions
N/A
Insertions

L

ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:A201S
  • GPC:K944T
  • GPC:G1158E

RdRp

  • RdRp:G1047E
  • RdRp:P1660T
  • RdRp:T1675N
  • RdRp:V3230I
Deletions
N/A
Insertions
N/A

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