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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000P9YF.1
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Display Name: China/LOC_000P9YF.1/2015
Y. Li
Sample details
Collection date
2015
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-12-31
Earliest release date
2020-04-01
Collection country
China
Collection subdivision level 1
Inner Mongolia
Isolate name
HANM-18
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 15:28
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Military Veterinary Institute, Key Laboratory of Jilin Province for Zoonosis Prevention and Control
INSDC
NCBI release date
2020-04-01
INSDC accession M
MN832722.1
Host
Host taxon id
266040
Host name scientific
Hyalomma asiaticum
Alignment and QC metrics M
Length M
5368
Total SNPs M
1009
Total inserted nucs M
3
Total deleted nucs M
1
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
1
Frame shifts M
GPC:187(nt:649-653)
Completeness M
100.00%
Submission details
Submission ID
MN832722.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 15:28:31 UTC
Date released
2025-09-17 15:32:29 UTC
Files
Annotations
LOC_000P9YF.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
M:
T
40
C
M:
G
50
T
M:
A
51
G
M:
G
56
A
M:
A
57
C
M:
C
66
T
M:
A
69
G
M:
A
70
G
M:
T
71
A
M:
G
73
A
M:
A
80
G
M:
C
82
T
M:
T
83
C
M:
C
85
T
M:
T
86
C
M:
T
91
A
M:
C
92
T
M:
C
96
T
Show more
Deletions
M:654
Insertions
ins_M:648:T, ins_M:5170:G, ins_M:5366:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
V
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
W
GPC:
G
16
D
GPC:
E
19
G
GPC:
H
21
L
GPC:
G
22
V
GPC:
H
24
S
GPC:
R
28
Q
GPC:
K
31
E
GPC:
D
33
G
GPC:
T
36
A
GPC:
T
37
I
GPC:
G
39
E
Show more
Deletions
GPC:188
Insertions
None
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