This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9YF.1

Display Name: Pakistan/LOC_000P9YF.1/2017-10
A. Zohaib, M. Saqib, M. A. Athar, M. H. Hussain, A. U. Sial, M. H. Tayyab, M. Batool, H. Sadia, Z. Taj, U. Tahir, M. Y. Jakhrani, J. Tayyab, M. A. Kakar, M. F. Shahid, T. Yaqub, J. Zhang, Q. Wu, F. Deng, V. M. Corman, S. Shen, I. Khan, Z. L. Shi, A.-U.-R. Sial, F. Ahmed, S. Faiz, M. Furqan, S. Shu & Z.-L. Shi

Sample details

Collection date
2017-10
Collection date (lower bound)
2017-10-01
Collection date (upper bound)
2017-10-31
Earliest release date
2020-03-31
Collection country
Pakistan
Isolate name
61T/Pakistan

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-03 17:55insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Wuhan Institute of Virology, Key Lab of Special Pathogens

INSDC

NCBI release date
2020-03-31
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
219
Total SNPs S
32
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
13.10%
Total stop codons S
0

Submission details

Submission ID
MN135941.1.S
Submitting group
Date submitted
2025-12-03 17:55:51 UTC
Date released
2025-12-03 17:59:29 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A322T
  • S:A325G
  • S:G328A
  • S:T334G
  • S:A337G
  • S:C343T
  • S:G367A
  • S:C370T
  • S:A379G
  • S:T385C
  • S:G397A
  • S:C400T
  • S:C403A
  • S:C406T
  • S:G409C
  • S:G418A
  • S:G421A
  • S:A425T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:A147V
    • Deletions
    None
    Insertions
    None

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