This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9XH.1

Russia/LOC_000P9XH.1/2007
A. Volynkina, A. Burlachenko, Y. Lisitskaya & E. Kotenev

Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

Sample details

Collection date
2007
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
22-STV/HU-2007

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 19:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-06-01
INSDC accession L
INSDC accession M

Host

Host

Submission details

Submission ID
KR821981.1.L/KR821564.1.M
Submitting group
Date submitted
2026-06-18 19:36:59 UTC
Date released
2026-06-18 19:39:05 UTC

Files

Annotations

Alignment and QC

Total SNPs L
42
Length L
437 (3.61%)
Total SNPs M
80
Length M
435 (8.11%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T131A
  • C148T
  • T151C
  • T154C
  • T160C
  • T163C
  • T202C
  • T218C
  • T229C
  • A240C
  • T241C
  • T253C
  • T254A
  • G264A
  • C265T
  • A268G
  • C276T
  • C284A

M

  • C4644T
  • T4649C
  • C4652T
  • T4661G
  • A4664G
  • A4667G
  • C4671T
  • T4676C
  • A4694T
  • C4697T
  • A4713G
  • A4730G
  • A4736G
  • T4742A
  • T4743C
  • G4745A
  • C4748T
  • A4751G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:H1527Y
  • GPC:E1534D
  • GPC:N1541D
  • GPC:S1564D
  • GPC:T1567I
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:M1597V
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:R1630I
  • GPC:K1652R
  • GPC:N1655S
  • GPC:K1661R

RdRp

  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
Deletions
N/A
Insertions
N/A

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