This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9TR.1

Japan/LOC_000P9TR.1/2000-09-20
K. Mizuta, C. Abiko, Y. Aoki, T. Ikeda, Y. Matsuzaki, S. Hongo, T. Itagaki, N. Katsushima, A. Ohmi, H. Nishimura & T. Ahiko

Department of Microbiology; Tokamachi 1-6-6, Yamagata, Yamagata 990-0031

Sample details

Collection date
2000-09-20
Earliest release date
2011-05-25
Sampling location
Japan (Yamagata)
Isolate name
1111-Yamagata-2000

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-05-25
NCBI update date
2013-05-17
INSDC accession

Submission details

Submission ID
AB634360.1
Submitting group
Date submitted
2026-08-10 14:37:50 UTC
Date released
2026-08-10 14:38:52 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
215
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • T2448G
  • G2452C
  • G2453C
  • A2454T
  • T2457C
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2496C
  • T2499C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
Deletions
N/A
Insertions
N/A

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