This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000P9TR.1
Download
Download FASTA
Download metadata TSV
China/LOC_000P9TR.1/2016-05
R. Guo,
S. Shen,
Y. F. Zhang,
J. M. Shi,
Z. Y. Su,
D. Liu,
J. L. Liu,
J. Yang,
Q. G. Wang,
Y. J. Zhang &
F. Deng
China Academy of Science, Wuhan Institute of Virology
Sample details
Collection date
2016-05
Earliest release date
2017-03-12
Sampling location
China
Isolate name
YL16070
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-13 15:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-03-12
INSDC accession L
KY354082.1
INSDC accession M
KY354081.1
INSDC accession S
KY354080.1
Submission details
Submission ID
KY354082.1.L/KY354081.1.M/KY354080.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:47:29 UTC
Host
Host
Ixodoidea
Lineage
Segment S Lineage
IV.2
Files
annotations
LOC_000P9TR.1.embl
Alignment and QC
Total SNPs L
1517
Total inserted nucs L
50
Total deleted nucs L
2
Length L
12156 (100%)
Variant L
True
Total SNPs M
1504
Total inserted nucs M
85
Total deleted nucs M
72
Length M
5379 (100%)
Variant M
True
Total SNPs S
214
Total inserted nucs S
1
Length S
1673 (100%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
G
32
A
A
35
G
A
42
G
G
43
C
T
49
C
C
59
T
G
71
C
G
93
A
A
109
G
G
112
A
T
131
A
T
139
C
C
148
T
T
151
C
T
160
C
T
163
C
C
193
T
Show more
M
T
40
C
G
50
T
A
51
G
A
52
T
G
56
T
T
58
A
T
59
G
T
65
G
A
69
G
A
70
T
T
71
G
T
72
A
G
73
T
G
76
A
A
80
G
C
81
T
C
82
T
T
83
A
Show more
S
C
38
A
T
48
C
G
51
A
G
54
A
A
61
G
G
67
A
C
97
T
G
99
A
A
118
G
C
142
T
T
157
C
C
160
T
C
166
T
C
178
A
T
182
C
G
190
A
G
196
A
C
217
T
Show more
Deletions
L
67, 68
M
345-362, 759-776, 5229-5264
Insertions
L
ins_11928:TG, ins_12092:CCTTCTCTACCATTCATTTCAGTTTCACTATTTCCAGGGTGTGGGGGG
M
ins_137:GGG, ins_203:GTC, ins_398:ACAAAAGAAACAAAAAAGCACACAACCCTA, ins_438:GTATCACTATATTGAGTGCAT, ins_634:TGA, ins_5199:CATAGTTTGCTTAACAAAACATGGC
S
ins_1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
K
GPC:
H
2
F
GPC:
I
3
M
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
N
GPC:
A
8
F
GPC:
L
12
H
GPC:
Q
13
L
GPC:
C
15
W
GPC:
L
17
G
GPC:
G
18
V
GPC:
E
19
G
GPC:
T
20
V
GPC:
H
21
T
GPC:
S
23
G
GPC:
H
24
V
GPC:
N
25
E
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
D
NP:
A
146
T
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
D
262
N
NP:
R
270
K
NP:
S
301
G
NP:
M
353
L
NP:
K
358
R
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
177
T
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
M
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
P
496
S
Show more
Deletions
GPC
GPC:80-83, GPC:207-211
Insertions
GPC
ins_GPC:124:PSITILSASNTSLPTSS
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue