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LOC_000P9TR.1
Download
Download FASTA
Download metadata TSV
Senegal/LOC_000P9TR.1/2016
N. Ndiaye,
A. Fall,
O. Kebe,
F. Thiaw,
M. Fall,
N. Dia,
A. Sall,
M. Faye &
O. Faye
Institut Pasteur, virology pole
Sample details
Collection date
2016
Earliest release date
2023-05-01
Sampling location
Senegal
Isolate name
EV_A71/2016_419
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-01 09:01
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-05-01
NCBI update date
2023-05-01
INSDC accession
ON191509.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
ON191509.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-01 09:01:13 UTC
Date released
2026-06-01 09:13:02 UTC
Clade
Clade EV-A71
C1
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
1499
Total inserted nucs
15
Total deleted nucs
3
Length
7403 (99.8%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
C
28
T
T
36
C
C
47
T
T
48
C
T
51
C
A
54
T
T
61
C
C
62
T
T
63
G
C
64
A
A
76
G
T
88
C
A
89
C
C
90
T
C
94
T
T
99
C
G
100
A
T
102
A
Show more
Deletions
21, 104, 743
Insertions
ins_738:GTT, ins_7408:AAAAAAAAAAGC
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
F
15
Y
2A:
T
26
N
2A:
N
57
D
2A:
R
68
K
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
V
2A:
V
121
I
2A:
S
129
N
2A:
E
145
D
2B
2B:
R
11
D
2B:
T
15
M
2B:
S
22
T
2B:
K
41
R
2C
2C:
M
11
A
2C:
N
13
S
2C:
F
22
S
2C:
V
60
I
2C:
M
76
L
2C:
I
81
S
2C:
A
103
T
2C:
R
151
H
2C:
A
173
T
2C:
V
200
I
2C:
Y
243
F
2C:
K
268
R
2C:
T
271
S
2C:
N
316
S
3A
3A:
R
6
K
3A:
I
44
V
3A:
E
46
D
3A:
N
56
S
3A:
V
61
I
3A:
I
65
V
3B
3B:
P
9
Q
3B:
I
10
T
3C
3C:
A
18
V
3C:
R
33
H
3C:
I
36
V
3C:
I
54
V
3C:
N
55
K
3C:
V
56
I
3C:
L
57
V
3C:
K
88
R
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
G
96
P
3C:
I
109
M
3C:
V
116
I
3C:
P
144
A
3C:
S
153
A
3C:
I
157
V
3C:
A
169
G
Show more
3D
3D:
M
6
V
3D:
R
10
K
3D:
N
37
T
3D:
Y
73
F
3D:
T
75
R
3D:
Q
76
E
3D:
N
91
K
3D:
S
93
T
3D:
K
94
A
3D:
M
97
I
3D:
E
99
D
3D:
Y
106
N
3D:
V
134
T
3D:
T
138
I
3D:
R
140
K
3D:
M
141
I
3D:
L
143
F
3D:
N
154
Y
Show more
VP1
VP1:
K
18
R
VP1:
P
22
Q
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
I
262
V
VP1:
S
275
A
VP1:
D
282
N
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
M
198
I
VP2:
T
200
A
VP3
VP3:
M
100
L
VP3:
T
232
A
VP3:
E
237
Q
VP3:
A
239
G
VP4
VP4:
T
7
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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