This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000P9TR.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000P9TR.1/1981
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1981
Earliest release date
2017-04-02
Sampling location
Uganda
Isolate name
SPU 128/81
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 15:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484043.1
INSDC accession M
KY484045.1
INSDC accession S
KY484044.1
Submission details
Submission ID
KY484043.1.L/KY484045.1.M/KY484044.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 15:36:26 UTC
Date released
2026-02-27 15:39:16 UTC
Host
Host
Hyalomma marginatum
Files
Annotations
LOC_000P9TR.1.embl
Alignment and QC
Total SNPs L
880
Total inserted nucs L
54
Total deleted nucs L
1
Length L
12161 (100%)
Variant L
False
Total SNPs M
664
Total inserted nucs M
4
Total deleted nucs M
1
Length M
5365 (98.3%)
Variant M
False
Total SNPs S
78
Total inserted nucs S
16
Length S
1673 (91.7%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
32
A
C
37
T
T
49
C
T
55
C
C
63
G
C
64
T
T
65
C
T
67
G
T
70
C
A
74
G
G
93
A
C
100
T
T
118
C
T
157
C
T
160
C
T
163
C
T
202
C
T
229
C
Show more
M segment
G
65
A
T
78
C
G
103
A
T
115
C
T
116
C
C
118
T
T
122
C
G
124
A
A
127
G
C
133
T
A
139
G
G
142
A
A
143
G
A
149
C
C
151
T
C
155
T
C
158
T
G
165
A
Show more
S segment
T
16
A
C
31
G
G
34
A
C
54
T
A
84
G
A
98
T
C
150
T
G
240
A
G
282
A
A
309
G
A
311
G
G
330
A
T
387
C
A
393
G
A
405
G
A
423
G
A
435
G
A
441
G
Show more
Deletions
L segment
12066
M segment
5166
Insertions
L segment
ins_11928:TG, ins_12092:TACCATTCATTTCAGTTTCATCATCATTATTATTATTTTAGGGTGTGGGGGG
M segment
ins_0:TCTC
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
F
10
L
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
H
24
Y
GPC:
G
26
E
GPC:
E
28
G
GPC:
N
31
K
GPC:
H
33
D
GPC:
D
39
G
GPC:
S
41
N
GPC:
Q
42
L
GPC:
P
44
S
GPC:
P
46
Q
GPC:
P
53
S
GPC:
V
54
I
GPC:
S
64
T
GPC:
S
68
N
Show more
NP
NP:
Y
20
F
NP:
K
91
R
RdRp
RdRp:
S
6
N
RdRp:
K
53
E
RdRp:
Y
60
N
RdRp:
R
80
K
RdRp:
T
165
K
RdRp:
A
202
T
RdRp:
N
206
Y
RdRp:
K
492
R
RdRp:
F
495
Y
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
P
774
L
RdRp:
N
779
S
RdRp:
I
783
T
RdRp:
H
786
Y
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue