This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9HB.1

Display Name: Kenya/LOC_000P9HB.1/2020-09
D. C. A. Omoga, D. P. Tchouassi, M. Venter, E. O. Ogola, J. Osalla, A. Kopp, I. Slothouwer, B. Torto, S. Junglen & R. Sang

Submission details

Submission ID
OQ357272.1.S
Submitting group
Date submitted
2025-07-01 21:35:50 UTC
Date released
2025-07-01 21:40:14 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-01 21:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
ICIPE, Human Health

Alignment and QC metrics S

Completeness S
29.84%
Length S
499
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
42
Total unknown nucs S
0

Sample details

Earliest release date
2023-07-31
Collection subdivision level 1
Baringo County
Collection country
Kenya
Collection date
2020-09
Collection date (lower bound)
2020-09-01
Collection date (upper bound)
2020-09-30
Isolate name
030_R135

Host

Host name scientific
Mus musculus
Host taxon id
Is lab host
True

INSDC

INSDC accession S
NCBI release date
2023-07-31

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:C178A
  • S:G189A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:C235T
  • S:C241T
  • S:A247G
  • S:C249T
  • S:C254T
  • S:G271A
  • S:C295T
  • S:A298G
  • S:A322G
  • S:A327G
  • S:G346A
  • S:A349G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R45K
  • NP:S52G
  • NP:S65F
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
    • Deletions
    None
    Insertions
    None

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