This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9EJ.1

Display Name: Kenya/LOC_000P9EJ.1/2017-05-24
T. Chiuya, D. K. Masiga, A. D. S. Bastos & E. M. Fevre

Sample details

Collection date
2017-05-24
Collection date (lower bound)
2017-05-24
Collection date (upper bound)
2017-05-24
Earliest release date
2020-03-23
Collection country
Kenya
Collection subdivision level 1
Kakamega
Isolate name
T138

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-07 17:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
ICIPE, Mbbu

INSDC

NCBI release date
2020-03-23
INSDC accession L

Host

Host taxon id
Host name scientific
Rhipicephalus

Alignment and QC metrics L

Length L
442
Total SNPs L
75
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.65%

Submission details

Submission ID
MN267048.1.L
Submitting group
Date submitted
2025-11-07 17:43:45 UTC
Date released
2025-11-07 17:46:36 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A6724G
  • L:A6727G
  • L:G6733T
  • L:G6739A
  • L:T6745C
  • L:A6751G
  • L:T6760A
  • L:C6766T
  • L:T6769C
  • L:A6772G
  • L:A6784C
  • L:G6790A
  • L:A6796C
  • L:T6800C
  • L:A6802G
  • L:G6805C
  • L:A6829G
  • L:A6835G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:A2330T
  • RdRp:N2345S
    • Deletions
    None
    Insertions
    None

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