This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8WL.1

USA/LOC_000P8WL.1/2003-01-01
D. Swetnam, S. G. Widen, T. G. Wood, M. Reyna, L. Wilkerson, M. Debboun, D. A. Symonds, D. G. Mead, B. J. Beaty, H. Guzman, R. B. Tesh, A. D. T. Barrett & D. M. Swetnam

University of Texas Medical Branch, Microbiology and Immunology

Sample details

Collection date
2003
Earliest release date
2018-11-19
Sampling location
USA (CO, Fort Collins (80526))
Isolate name
Laco 3038

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-18 12:55insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-11-19
NCBI update date
2018-11-19
INSDC accession

Host

Host

Submission details

Submission ID
MH170234.1
Submitting group
Date submitted
2026-03-18 12:54:31 UTC
Date released
2026-03-18 13:10:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
26
Length
11021 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • G786A
  • G789A
  • C912T
  • T1442C
  • C1465T
  • T1506C
  • C2466T
  • A4026G
  • G4088A
  • C4107T
  • A4146G
  • T4584C
  • C4803T
  • G5280A
  • C6138T
  • T6405C
  • C6426T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS5

  • NS5:K314R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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