This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBWK.1

Display Name: Russia/LOC_000NBWK.1/2012
A. Volynkina, A. Burlachenko, Y. Lisitskaya & E. Kotenev

Sample details

Collection date
2012
Collection date (lower bound)
2012-01-01
Collection date (upper bound)
2012-12-31
Earliest release date
2016-06-01
Collection country
Russia
Isolate name
90-ROS/TI-2012

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:28insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

INSDC

NCBI release date
2016-06-01
INSDC accession M

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics M

Length M
435
Total SNPs M
77
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
8.11%

Submission details

Submission ID
KR821355.1.M
Submitting group
Date submitted
2025-09-17 15:28:31 UTC
Date released
2025-09-17 15:30:04 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:C4644T
  • M:C4652T
  • M:T4661G
  • M:A4664G
  • M:C4671T
  • M:T4676C
  • M:A4694G
  • M:A4701C
  • M:A4713G
  • M:A4730G
  • M:A4736G
  • M:T4742A
  • M:T4743C
  • M:G4745A
  • M:C4748T
  • M:A4751G
  • M:G4757A
  • M:T4763G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H1527Y
  • GPC:K1537Q
  • GPC:N1541D
  • GPC:S1564D
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:M1597I
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:F1633L
  • GPC:H1637L
  • GPC:K1652R
  • GPC:K1661R
    • Deletions
    None
    Insertions
    None

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