This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBWK.1

Display Name: Russia/LOC_000NBWK.1/2015
Popova, A.; Kulichenko, A.; Volynkina, A.; Kotenev, E.; Pisarenko, S.; Lisitskaya, Y.; Shaposhnikova, L.

Submission details

Submission ID
KU161582.1.L/KU161584.1.M/KU161586.1.S
Submitting group
Date submitted
2025-05-09 10:44:30 UTC
Date released
2025-05-09 10:46:19 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-09 10:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

Alignment and QC metrics L

Completeness L
99.84%
Length L
12131
Total ambiguous nucs L
0
Total deleted nucs L
12
Total frame shifts L
0
Total inserted nucs L
54
Total SNPs L
1309
Total unknown nucs L
0

Alignment and QC metrics M

Completeness M
100.00%
Frame shifts M
GPC:77-80(nt:319-332)
Length M
5364
Total ambiguous nucs M
0
Total deleted nucs M
28
Total frame shifts M
1
Total inserted nucs M
26
Total SNPs M
1002
Total unknown nucs M
0

Alignment and QC metrics S

Completeness S
100.00%
Length S
1673
Total ambiguous nucs S
0
Total deleted nucs S
11
Total frame shifts S
0
Total inserted nucs S
12
Total SNPs S
234
Total unknown nucs S
0

Sample details

Earliest release date
2016-10-10
Collection country
Russia
Collection date
2015
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-12-31
Isolate name
1-CR/HU-2015

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2016-10-10

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G23T
  • L:C31T
  • L:G32T
  • L:A35G
  • L:A42T
  • L:G43C
  • L:T49C
  • L:A53G
  • L:T58C
  • L:C63T
  • L:C64G
  • L:A72G
  • L:A73T
  • L:A91G
  • L:G93A
  • L:C100T
  • L:A109G
  • L:T131A

    • M

  • M:T40C
  • M:G50A
  • M:A51G
  • M:A61T
  • M:T67C
  • M:T68C
  • M:A69G
  • M:T71A
  • M:G76C
  • M:A80G
  • M:T83C
  • M:G84A
  • M:C85T
  • M:T86C
  • M:C92T
  • M:T100C
  • M:T102C
  • M:C103T

    • S

  • S:C14A
  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:A109G
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
  • S:C178A
    • Deletions
    L:11982-11990, L:12033, L:12073, L:12084, M:165-167, M:220-225, M:318, M:333, M:334, M:358-360, M:5182-5191, M:5211-5213, S:1548-1553, S:1573, S:1574, S:1624-1626
    Insertions
    ins_S:1613:A, ins_S:1616:TG, ins_S:1579:ATC, ins_S:1566:GACTAT, ins_M:206:AGCACA, ins_M:5220:TTGTTCATC, ins_M:5171:T, ins_M:5199:AGTG, ins_M:158:CAG, ins_M:350:CCA, ins_L:12092:TAATATTTATACTAGTTTCATTATTTGAAGGGTGTGGGGGG, ins_L:11924:G, ins_L:12026:C, ins_L:11972:CATACCATA, ins_L:65:C, ins_L:11922:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:E19G
  • GPC:T20A
  • GPC:G22E
  • GPC:S23Q
  • GPC:H24S
  • GPC:E26A
  • GPC:R28D
  • GPC:K31R
  • GPC:D33N
  • GPC:M35I
  • GPC:T37A

    • NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:F48Y
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:I277T
  • NP:S301G

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:R166K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N448S
    • Deletions
    GPC:76, GPC:81, GPC:90
    Insertions
    None

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