This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBWK.1

Display Name: Kazakhstan/LOC_000NBWK.1/2015
P. Deryabin, B. Atshabar, Y. Sansyzbaev, V. Berezin, T. Nurmakhanov, O. Yeskhojayev, A. Vilkova, A. Shevtsov, R. Hewson & B. Atkinson

Submission details

Submission ID
KX096701.1.S
Submitting group
Date submitted
2025-07-11 18:53:07 UTC
Date released
2025-07-11 18:55:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Public Health England, Research

Alignment and QC metrics S

Completeness S
28.17%
Length S
471
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
64
Total unknown nucs S
0

Sample details

Earliest release date
2016-04-30
Collection subdivision level 1
Maktaaral district
Collection country
Kazakhstan
Collection date
2015
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-12-31
Isolate name
tick pool #116

Host

Host name scientific
Hyalomma excavatum
Host taxon id

INSDC

INSDC accession S
NCBI release date
2016-04-30

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G190A
  • S:G196A
  • S:T199C
  • S:C217T
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G256A
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T277C
  • S:T289C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124A
  • NP:N150H
    • Deletions
    None
    Insertions
    None

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