This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBWK.1

South_Africa/LOC_000NBWK.1/1989
F. J. Burt, J. T. Paweska, B. Ashkettle & R. Swanepoel

NHLS/UFS, Medical Virology

Sample details

Collection date
1989
Earliest release date
2008-12-30
Sampling location
South Africa
Isolate name
SPU 337/89

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-06 10:59insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession L segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
FJ435366.1.L/FJ435421.1.S
Submitting group
Date submitted
2026-06-06 10:59:22 UTC
Date released
2026-06-06 11:00:33 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
56
Length L segment
754 (6.23%)
Total SNPs S segment
20
Length S segment
436 (24.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • T2182C
  • G2233A
  • A2260G
  • C2287T
  • T2290A
  • T2329C
  • A2338G
  • C2341T
  • A2345G
  • T2347C
  • G2367A
  • G2374A
  • A2375G
  • G2385A
  • T2389C
  • C2397T
  • A2412G
  • C2414A

S segment

  • A213G
  • C228T
  • G240A
  • A255G
  • T258C
  • T273C
  • A309G
  • G312A
  • G330A
  • G339A
  • C345T
  • T354C
  • T369C
  • T387C
  • A393G
  • G444A
  • A528G
  • T534C
  • C562A
  • A567G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

RdRp

  • RdRp:T757A
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
  • RdRp:N779S
  • RdRp:Q780K
  • RdRp:I783T
  • RdRp:E785D
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
Deletions
N/A
Insertions
N/A

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