This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBWK.1

Display Name: Iran/LOC_000NBWK.1/2004
N. Shahhosseini, S. Chinikar, T. Jalali & S. Khakifirouz

Sample details

Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31
Earliest release date
2015-10-31
Collection country
Iran
Isolate name
Iran-Tabriz102

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-24 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Bernhard Nocht Institute for Tropical Medicine

INSDC

NCBI release date
2015-10-31
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
475
Total SNPs S
64
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
28.41%

Submission details

Submission ID
KP075673.1.S
Submitting group
Date submitted
2025-10-24 15:13:55 UTC
Date released
2025-10-24 15:15:27 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:G169A
  • S:T172C
  • S:G173A
  • S:T175C
  • S:C178A
  • S:T182C
  • S:G190A
  • S:G196A
  • S:C208T
  • S:C217T
  • S:G229A
  • S:C235T
  • S:A268C
  • S:G271A
  • S:C295T
  • S:A298T
  • S:T303C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:V40I
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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