This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBWK.1

USA/LOC_000NBWK.1/2013-07-22
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2013-07-22
Earliest release date
2023-08-02
Sampling location
USA (Larimer, Colorado)
Isolate name
WNV/mosquito/Larimer-CO-USA/2013-07-22/W1751

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-15 20:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721534.1
Submitting group
Date submitted
2026-03-15 20:25:42 UTC
Date released
2026-03-15 21:00:50 UTC

Lineage

Lineage
1A

Files

annotations

Alignment and QC

Total SNPs
71
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:V58I
  • NS2A:R188K
  • NS2A:L218F
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:Q19K
  • NS4B:K24E
  • NS4B:I240M
  • NS5:K177R
  • NS5:A749V
  • capsid:F54L
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T256C
  • C340T
  • C435T
  • A630G
  • G948A
  • T1442C
  • C1465T
  • A1500G
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • C2466T
  • T2475C
  • C3501T
  • T3528C
  • G3697A
  • C3912T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:V58I
  • NS2A:R188K
  • NS2A:L218F

NS4B

  • NS4B:Q19K
  • NS4B:K24E
  • NS4B:I240M

NS5

  • NS5:A749V

capsid

  • capsid:F54L

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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