This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBWK.1

Display Name: Kosovo/LOC_000NBWK.1/2012-05-01
K. Sherifi, D. Cadar, S. Muji, A. Robaj, S. Ahmeti, X. Jakupi, P. Emmerich, A. Kruger & A. Krueger

Sample details

Collection date
2012-05-01
Collection date (lower bound)
2012-05-01
Collection date (upper bound)
2012-05-01
Earliest release date
2014-10-13
Collection country
Kosovo
Collection subdivision level 1
Malisheve

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-07 17:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Bernhard Nocht Institute for Tropical Medicine WHO Collaborating Centre for Arbovirus and Haemorrhagic Fever Reference and Rese, Division of Arbovirology

INSDC

NCBI release date
2014-10-13
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma marginatum

Alignment and QC metrics S

Length S
292
Total SNPs S
47
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
17.46%

Submission details

Submission ID
KJ545675.1.S
Submitting group
Date submitted
2025-11-07 17:43:45 UTC
Date released
2025-11-07 17:45:17 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T274C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:C343T
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:C370T
  • S:A379G
  • S:G381A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:S165P
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue