This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBST.1

Display Name: Kosovo/LOC_000NBST.1/2013-07-01
L. Fajs, X. Jakupi, S. Ahmeti, I. Humolli, I. Dedushaj & T. Avsic-Zupanc

Sample details

Collection date
2013-07-01
Collection date (lower bound)
2013-07-01
Collection date (upper bound)
2013-07-01
Earliest release date
2014-03-12
Collection country
Kosovo
Isolate name
KS_224

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:45insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Ljubljana, Faculty of Medicine, Institute of Microbiology and Immunology

INSDC

NCBI release date
2014-03-12
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics M

Length M
421
Total SNPs M
76
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
7.85%
Total stop codons M
0

Alignment and QC metrics S

Length S
1109
Total SNPs S
149
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
66.33%
Total stop codons S
0

Submission details

Submission ID
KF595147.1.M/KF595136.1.S
Submitting group
Date submitted
2025-12-19 17:45:14 UTC
Date released
2025-12-19 17:46:42 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:C4644T
  • M:C4652T
  • M:T4661G
  • M:A4664G
  • M:G4666A
  • M:C4671T
  • M:T4676C
  • M:A4694T
  • M:C4697T
  • M:A4713G
  • M:A4730G
  • M:A4736G
  • M:T4742A
  • M:T4743C
  • M:G4745A
  • M:C4748T
  • M:A4751G
  • M:A4756G

    • S

  • S:C217T
  • S:C244T
  • S:T250G
  • S:G262A
  • S:A268C
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:C343T
  • S:A349G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:R1525K
  • GPC:H1527Y
  • GPC:E1534D
  • GPC:N1541D
  • GPC:K1555R
  • GPC:S1564D
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:M1597I
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1652R

    • NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:N419S
    • Deletions
    None
    Insertions
    None

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