This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBST.1

Display Name: Iran/LOC_000NBST.1/2012
M. H. Kayedi, S. Chinikar, E. Mostafavi, S. Khakifirouz, T. Jalali, A. Hosseini-Chegeni, A. Naghizadeh, M. Niedrig, A. R. Fooks & N. Shahhosseini

Sample details

Collection date
2012
Collection date (lower bound)
2012-01-01
Collection date (upper bound)
2012-12-31
Earliest release date
2015-10-04
Collection country
Iran
Isolate name
IR-T6-HAS

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 09:31insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Pasteur Institute of Iran

INSDC

NCBI release date
2015-10-04
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma asiaticum

Alignment and QC metrics S

Length S
489
Total SNPs S
65
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
29.25%

Submission details

Submission ID
KR136195.1.S
Submitting group
Date submitted
2025-10-14 09:31:46 UTC
Date released
2025-10-14 09:33:31 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:G169A
  • S:T172C
  • S:C178A
  • S:T182C
  • S:G190A
  • S:G196A
  • S:T199C
  • S:C208T
  • S:C217T
  • S:G229A
  • S:C235T
  • S:G256A
  • S:A268C
  • S:G271A
  • S:T289C
  • S:G292A
  • S:C295T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
    • Deletions
    None
    Insertions
    None

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