This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBST.1

Display Name: Japan/LOC_000NBST.1/2007-06-05
K. Mizuta, C. Abiko, Y. Aoki, T. Ikeda, Y. Matsuzaki, S. Hongo, T. Itagaki, N. Katsushima, A. Ohmi, H. Nishimura & T. Ahiko

Sample details

Collection date
2007-06-05
Collection date (lower bound)
2007-06-05
Collection date (upper bound)
2007-06-05
Earliest release date
2011-05-25
Collection country
Japan
Collection subdivision level 1
Yamagata
Isolate name
1249-Yamagata-2007

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-09 17:50insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Microbiology; Tokamachi 1-6-6, Yamagata, Yamagata 990-0031

INSDC

NCBI release date
2011-05-25
NCBI update date
2013-05-17
INSDC accession

Alignment and QC metrics

Length
891
Total SNPs
216
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
12.02%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
AB634415.1
Submitting group
Date submitted
2025-12-09 17:50:26 UTC
Date released
2025-12-09 17:52:35 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • T2451C
  • G2452C
  • G2453C
  • A2454C
  • C2463T
  • T2469C
  • G2475A
  • G2476A
  • T2478C
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • G2489A
  • T2493G
  • G2494A
  • G2495A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
    • Deletions
    None
    Insertions
    None

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