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LOC_000NBST.1
Download
Download FASTA
Download metadata TSV
South_Africa/LOC_000NBST.1/1987
V. M. Deyde,
M. L. Khristova,
P. E. Rollin,
T. G. Ksiazek &
S. T. Nichol
Centers for Disease Control and Prevention, Special Pathogens Branch, Biotechnology Core Facility Branch
Sample details
Collection date
1987
Earliest release date
2006-08-16
Sampling location
South Africa
Isolate name
SPU103/87
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2006-08-16
INSDC accession L
DQ211621.1
INSDC accession M
DQ211634.1
INSDC accession S
DQ211647.1
Host
Host
human (Homo sapiens)
Is lab host
True
Submission details
Submission ID
DQ211621.1.L/DQ211634.1.M/DQ211647.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-12 12:19:37 UTC
Date released
2026-11-12 12:21:11 UTC
Lineage
Segment S Lineage
III
Files
Annotations
LOC_000NBST.1.embl
Alignment and QC
Total SNPs L
864
Total inserted nucs L
50
Length L
12158 (100%)
Total SNPs S
122
Total inserted nucs S
1
Length S
1673 (100%)
Total SNPs M
468
Total deleted nucs M
2
Length M
5364 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
32
C
A
35
G
T
49
C
G
56
A
T
60
C
C
63
G
C
64
T
T
65
C
T
70
C
G
71
A
A
73
G
C
82
T
A
91
G
G
93
A
T
131
A
G
141
A
C
148
T
T
151
C
Show more
M
C
43
A
T
68
C
A
70
G
C
77
T
A
78
T
T
79
C
C
85
T
T
86
C
A
87
G
A
117
G
C
119
T
A
146
G
A
148
G
G
149
A
A
150
G
C
164
T
A
169
G
C
177
T
Show more
S
G
54
A
G
67
A
A
85
G
T
157
C
C
166
T
C
178
A
G
190
A
T
199
C
G
202
A
A
209
G
C
217
T
G
229
A
C
235
T
C
244
T
G
271
A
T
289
C
C
295
T
A
322
G
Show more
Deletions
M
5165, 5166
Insertions
L
ins_11928:TG, ins_12096:GTTCATTTCAGTTTCATCATCATTATTATCTGGGGTGTGGGGGGAACG
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
E
19
G
GPC:
T
20
A
GPC:
E
26
G
GPC:
H
29
Y
GPC:
K
31
N
GPC:
D
33
G
GPC:
T
34
A
GPC:
M
35
L
GPC:
P
38
L
GPC:
N
41
G
GPC:
P
42
Q
GPC:
L
52
P
GPC:
I
54
T
GPC:
L
56
H
GPC:
D
57
N
GPC:
P
63
S
GPC:
L
70
S
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NP
NP:
S
52
G
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
R
22
K
RdRp:
Y
60
N
RdRp:
T
165
M
RdRp:
N
206
Y
RdRp:
T
265
A
RdRp:
I
480
V
RdRp:
S
498
N
RdRp:
I
505
T
RdRp:
A
508
V
RdRp:
V
515
I
RdRp:
K
599
R
RdRp:
D
676
E
RdRp:
E
754
D
RdRp:
R
764
N
RdRp:
L
765
P
RdRp:
T
767
A
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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