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LOC_000NBST.1
Download
Download FASTA
Download metadata TSV
Japan/LOC_000NBST.1/2010
A. Kaida,
H. Kubo,
J. Sekiguchi,
U. Kohdera,
M. Togawa,
M. Shiomi,
T. Nishigaki &
N. Iritani
Microbiology; 8-34, Tojo-cho, Tennoji-ku, Osaka, Osaka 543-0026
Sample details
Collection date
2010
Earliest release date
2011-03-25
Sampling location
Japan (Osaka City)
Isolate name
JPOC10-378
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2011-03-25
NCBI update date
2016-10-15
INSDC accession
AB601883.2
Submission details
Submission ID
AB601883.2
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:11 UTC
Date released
2026-03-21 21:27:26 UTC
Clade
Clade EV-D68
C
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
857
Total inserted nucs
1
Total deleted nucs
37
Length
7331 (100%)
Variant
False
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
11
C
C
12
T
T
28
C
T
61
C
C
62
T
A
88
T
T
89
C
C
95
T
C
101
T
C
114
T
T
116
C
T
118
C
C
122
T
T
158
C
C
168
T
T
172
C
T
187
C
G
197
A
Show more
Deletions
645, 689-724
Insertions
ins_26:C
Amino acid substitutions
Substitutions called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
59
I
2A:
R
65
K
2A:
V
144
A
2B
2B:
K
26
R
2B:
I
64
V
2C
2C:
K
58
S
2C:
S
61
N
2C:
R
72
Q
2C:
S
98
A
2C:
N
273
D
2C:
T
275
A
2C:
V
304
I
3A
3A:
A
13
T
3A:
V
53
L
3C
3C:
I
17
V
3C:
Y
31
F
3C:
I
46
T
3C:
R
55
K
3C:
R
92
K
3C:
C
93
Y
3D
3D:
M
11
V
3D:
A
17
V
3D:
N
95
S
3D:
E
101
D
3D:
Q
130
H
3D:
S
135
T
3D:
R
161
K
3D:
N
196
S
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
G
337
A
3D:
I
360
V
VP1
VP1:
S
1
L
VP1:
N
2
D
VP1:
H
5
D
VP1:
G
6
A
VP1:
V
13
I
VP1:
G
76
S
VP1:
K
84
R
VP1:
A
92
T
VP1:
S
95
E
VP1:
G
97
Q
VP1:
H
99
D
VP1:
K
110
R
VP1:
N
142
S
VP1:
N
143
S
VP1:
D
144
S
VP1:
S
145
N
VP1:
T
146
A
VP1:
E
169
Q
Show more
VP2
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
A
VP2:
N
74
G
VP2:
Y
98
H
VP2:
H
135
Y
VP2:
D
136
N
VP2:
T
138
N
VP2:
N
144
D
VP2:
R
151
E
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
V
225
M
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
S
VP3:
N
62
V
VP3:
R
68
K
VP3:
V
73
A
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
163
V
VP3:
S
180
N
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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