This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBST.1

Display Name: Turkey/LOC_000NBST.1/2004
Zivcec, M.; Guerrero, L.; Albarino, C.; Spiropoulou, C.; Rollin, P. E.; Ksiazek, T. G.; Nichol, S. T.

Submission details

Submission ID
MF511207.1.S
Submitting group
Date submitted
2025-05-08 15:37:02 UTC
Date released
2025-05-08 15:39:19 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-08 15:37insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment and QC metrics S

Completeness S
97.79%
Length S
1636
Total ambiguous nucs S
0
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
228
Total unknown nucs S
0

Sample details

Earliest release date
2017-09-06
Collection country
Turkey
Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31
Isolate name
Tur_2004_813048_S

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession S
NCBI release date
2017-09-06

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:A109G
  • S:C115T
  • S:G134A
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T182C
  • S:C187T
    • Deletions
    S:1542-1547, S:1610-1619
    Insertions
    ins_S:1563:TATG, ins_S:1629:CTATCTTTCA, ins_S:1577:A, ins_S:1566:AT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F
    • Deletions
    None
    Insertions
    None

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