This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000N0EV.1

USA/LOC_000N0EV.1/2010-01-01
R. M. Newman, M. C. Zody, W. Reisen, G. Ebel, A. Brault, N. Duggal, T. W. Poon, P. Charlebois, B. Weiner, X. Yang, M. E. Piper, M. Fitzgerald, C. McCowan, S. Young, S. Gargeya, J. Levin, C. Malboeuf, J. Qu, A. Ireland, S. B. Chapman, C. Murphy, J. Wortman, C. Nusbaum & B. Birren

Broad Institute of MIT & Harvard

Sample details

Collection date
2010
Earliest release date
2014-06-30
Sampling location
USA
Isolate name
WNV-1/US/BID-V7478/2010

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2014-06-30
NCBI update date
2014-06-30
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KJ501181.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:51:33 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
75
Total deleted nucs
153
Length
10172 (93.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:A110G
  • NS2B:A41V
  • NS2B:A103V
  • NS3:E94D
  • NS3:A177T
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS5:K21R
  • NS5:K177R
  • NS5:K194R
  • NS5:N281S
  • NS5:L500F
  • capsid:V47E
  • capsid:L48W
  • capsid:A49R
  • capsid:G122E
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T76C
  • T77G
  • T236A
  • T239G
  • G241C
  • C242G
  • G461A
  • G492A
  • A630G
  • C660T
  • C987T
  • T1221A
  • T1368C
  • C1371T
  • T1442C
  • C1465T
  • C2115T
  • T2226G
Deletions

82-234
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:A110G

NS2B

  • NS2B:A41V

NS3

  • NS3:E94D
  • NS3:A177T

NS4A

  • NS4A:A85T

NS5

  • NS5:K21R
  • NS5:K194R
  • NS5:N281S
  • NS5:L500F

capsid

  • capsid:V47E
  • capsid:L48W
  • capsid:A49R
  • capsid:G122E

env

  • env:V159A
  • env:L167F
  • env:V488I
Deletions
N/A
Insertions
N/A

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