This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000N0CZ.1

USA/LOC_000N0CZ.1/2011-01-01
R. M. Newman, M. C. Zody, W. Reisen, G. Ebel, A. Brault, N. Duggal, T. W. Poon, P. Charlebois, B. Weiner, X. Yang, M. E. Piper, M. Fitzgerald, C. McCowan, S. Young, S. Gargeya, J. Levin, C. Malboeuf, J. Qu, A. Ireland, S. B. Chapman, C. Murphy, J. Wortman, C. Nusbaum & B. Birren

Broad Institute of MIT & Harvard

Sample details

Collection date
2011
Earliest release date
2014-06-30
Sampling location
USA
Isolate name
WNV-1/US/BID-V7476/2011

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2014-06-30
NCBI update date
2014-06-30
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KJ501179.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:51:33 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
68
Total deleted nucs
241
Length
10229 (94.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4A:M107T
  • NS4B:P87L
  • NS4B:F119L
  • NS5:T25N
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T6A
  • C292T
  • A630G
  • C660T
  • C762T
  • T1442C
  • C1465T
  • A1527G
  • C2080T
  • A2205G
  • T2259C
  • C2466T
  • C2652T
  • C2961T
  • C3159T
  • C3570T
  • C4107T
  • C4132T
Deletions

11-35, 43-47, 50-260
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS4A

  • NS4A:M107T

NS4B

  • NS4B:P87L
  • NS4B:F119L

NS5

  • NS5:T25N

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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