This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MZR9.1

Germany/CHVir-BE24-M0762-1/2024-08-12
C. Patzina-Mehling, A. Kopp, Y.-S. Lee, M. X. L. Birkl, S. Ebers, K. Voigt, S. L. Graff, U. Beisel, A. Planillo, S. Kramer-Schadt & S. Junglen

Charite - Universitaetsmedizin Berlin, Institute for Virology

Sample details

Collection date
2024-08-12
Earliest release date
2026-04-22
Sampling location
Germany (Berlin)
Isolate name
CHVir-BE24-M0762-1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:22insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-22
NCBI update date
2026-04-22
INSDC accession

Host

Host

Submission details

Submission ID
PZ019016.1
Submitting group
Date submitted
2026-05-20 16:22:01 UTC
Date released
2026-05-20 16:47:22 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
190
Total deleted nucs
6596
Length
879 (67.8%)
Amino Acid Mutations from founder clade
  • env:T159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T1343C
  • A1344T
  • A1348T
  • A1350G
  • C1352T
  • T1357C
  • T1358A
  • A1362G
  • T1368C
  • C1377T
  • A1380G
  • G1383C
  • T1389A
  • C1395G
  • A1401C
  • A1404G
  • T1407G
  • G1413T
Deletions

2211-8806
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159A
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T
  • env:I253V
  • env:L312A
  • env:A369S
  • env:K413R
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue