This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Enterovirus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Enterovirus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000MZ8A.1
Download
Download FASTA
Download metadata TSV
USA/LOC_000MZ8A.1/2014-09
C.-Y. Pan,
T. Huynh,
T. Padilla,
T. F. F. Ng,
C. J. Castro,
R. L. Marine,
W. A. Nix &
D. A. Wadford
California Department of Public Health, Viral and Rickettsial Disease Laboratory
Sample details
Collection date
2014-09
Earliest release date
2019-04-28
Sampling location
USA (CA)
Isolate name
USA/CA/2014-RGDS-1027
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-12 21:09
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-04-28
NCBI update date
2019-04-28
INSDC accession
MK681492.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MK681492.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-12 21:09:01 UTC
Date released
2026-06-12 21:18:57 UTC
Clade
Clade EV-D68
B1
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
897
Total inserted nucs
1
Total deleted nucs
22
Length
7337 (99.9%)
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
11
C
C
12
T
T
61
C
C
62
T
A
88
T
T
89
C
C
95
T
C
101
T
C
114
T
T
116
C
C
122
T
A
126
T
A
140
G
T
158
C
T
172
C
T
187
A
G
197
A
C
203
T
Show more
Deletions
703-724
Insertions
ins_28:C
Amino acid substitutions
Substitutions called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
A
2A:
R
65
K
2A:
D
66
N
2A:
A
99
V
2A:
V
144
A
2B
2B:
I
64
V
2C
2C:
S
1
G
2C:
K
58
N
2C:
R
72
Q
2C:
S
98
A
2C:
A
102
V
2C:
N
273
G
2C:
T
275
A
2C:
V
304
I
3A
3A:
A
13
T
3A:
I
46
V
3A:
V
53
I
3C
3C:
I
46
T
3C:
R
55
K
3C:
C
93
Y
3D
3D:
N
6
S
3D:
M
11
V
3D:
S
41
P
3D:
V
88
T
3D:
N
95
S
3D:
E
101
D
3D:
Q
130
H
3D:
S
160
P
3D:
R
161
I
3D:
R
274
K
3D:
I
278
V
3D:
K
307
R
3D:
H
345
Q
VP1
VP1:
S
1
L
VP1:
N
2
D
VP1:
G
6
A
VP1:
V
13
I
VP1:
G
76
S
VP1:
K
84
R
VP1:
N
90
D
VP1:
A
92
T
VP1:
S
95
A
VP1:
G
97
Q
VP1:
T
98
A
VP1:
H
99
D
VP1:
K
110
R
VP1:
N
142
S
VP1:
N
143
S
VP1:
D
144
N
VP1:
S
145
N
VP1:
M
148
V
Show more
VP2
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
T
VP2:
N
74
G
VP2:
Y
98
H
VP2:
D
136
N
VP2:
T
138
N
VP2:
N
144
D
VP2:
R
151
E
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
M
222
T
VP2:
V
225
M
VP3
VP3:
V
24
A
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
S
VP3:
N
62
V
VP3:
R
68
K
VP3:
V
69
I
VP3:
V
73
A
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
163
V
VP3:
S
180
N
VP4
VP4:
T
10
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue