This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MZ5G.1

USA/LOC_000MZ5G.1/2011-01-01
R. M. Newman, M. C. Zody, W. Reisen, G. Ebel, A. Brault, N. Duggal, T. W. Poon, P. Charlebois, B. Weiner, X. Yang, M. E. Piper, M. Fitzgerald, C. McCowan, S. Young, S. Gargeya, J. Levin, C. Malboeuf, J. Qu, A. Ireland, S. B. Chapman, C. Murphy, J. Wortman, C. Nusbaum & B. Birren

Broad Institute of MIT & Harvard

Sample details

Collection date
2011
Earliest release date
2014-06-30
Sampling location
USA
Isolate name
WNV-1/US/BID-V7428/2011

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2014-06-30
NCBI update date
2014-06-30
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KJ501138.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:51:33 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
70
Length
11028 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:I37L
  • NS2A:H119Y
  • NS2A:L212F
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS4B:A83T
  • NS4B:V89I
  • NS4B:V91I
  • NS5:K177R
  • NS5:D881E
  • capsid:S2F
  • env:V24I
  • env:K93R
  • env:T126I
  • env:I159A
  • env:V431I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C101T
  • A333G
  • A630G
  • C660T
  • C720T
  • G1036A
  • T1107C
  • T1442C
  • C1465T
  • C1470T
  • C2223T
  • G2257A
  • C2466T
  • C3414T
  • C3453T
  • A3495G
  • C3570T
  • A3634C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:I37L
  • NS2A:H119Y
  • NS2A:L212F

NS4A

  • NS4A:A85T

NS4B

  • NS4B:A83T
  • NS4B:V89I
  • NS4B:V91I

NS5

  • NS5:D881E

capsid

  • capsid:S2F

env

  • env:V24I
  • env:V159A
  • env:L167F
  • env:V431I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue