This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MPDA.1

Israel/052m_ISR10/2010-01-01
K. Sekulin, J. Kolodziejek, H. Bin & N. Nowotny

University of Veterinary Medicine Vienna, Zoonoses and Emerging Infections Group, Clinical Virology

Sample details

Collection date
2010
Earliest release date
2013-11-30
Sampling location
Israel
Isolate name
052m_ISR10

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2013-11-30
NCBI update date
2013-11-30
INSDC accession

Host

Host

Submission details

Submission ID
KC131120.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:51:33 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
90
Length
2756 (25%)
Amino Acid Mutations from founder clade
  • NS1:A70S
  • capsid:A112V
  • env:K93R
  • env:T126I
  • env:I159V
  • env:I373N
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • C282T
  • G354A
  • C381T
  • C431T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • G786A
  • T826C
  • T850C
  • C858T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S

capsid

  • capsid:A112V

env

  • env:L167F
  • env:I373N
Deletions
N/A
Insertions
N/A

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