This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MP6Q.1

Greece/Nestos-Greece-2012/2012-08-06
A. Papa, E. Papadopoulou, E. Gavana, S. Kalaitzopoulou & S. Mourelatos

Aristotle University of Thessaloniki, Dept. of Microbiology

Sample details

Collection date
2012-08-06
Earliest release date
2013-01-15
Sampling location
Greece
Isolate name
Nestos-Greece-2012

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2013-01-15
NCBI update date
2013-01-15
INSDC accession

Host

Host

Submission details

Submission ID
JX860675.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:51:33 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
69
Length
365 (3.31%)
Amino Acid Mutations from founder clade
  • NS3:H249P
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5308T
  • A5313G
  • A5316C
  • G5328T
  • G5343A
  • A5346C
  • C5349A
  • A5364G
  • T5367C
  • A5369G
  • T5382C
  • T5397C
  • T5403C
  • C5406T
  • C5412A
  • T5430A
  • G5436A
  • G5439C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:A233S
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
  • NS3:S347T
Deletions
N/A
Insertions
N/A

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