This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MP4U.1

USA/LOC_000MP4U.1/2025-08-20
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

Sample details

Collection date
2025-08-20
Earliest release date
2025-10-29
Sampling location
USA (Washington)
Isolate name
WNV/USA/WAPHL-813011/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-05 16:06insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-10-29
NCBI update date
2025-10-29
INSDC accession

Host

Host

Submission details

Submission ID
PX471957.1
Submitting group
Date submitted
2026-03-05 16:06:25 UTC
Date released
2026-03-05 16:26:20 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
95
Total deleted nucs
13
Length
10751 (97.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2A:A194T
  • NS2B:A103V
  • NS3:T249P
  • NS4A:R41K
  • NS4A:V85T
  • NS5:K177R
  • NS5:K314R
  • NS5:Y374C
  • env:K93R
  • env:T123A
  • env:T126I
  • env:I159A
  • env:L412F
  • prM:K9R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C246T
  • A491G
  • C600T
  • A630G
  • C660T
  • G792A
  • C1119T
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • C2067T
  • A2097C
  • T2103C
  • C2200T
  • C2448T
  • C2466T
  • C2574T
Deletions

10417-10429
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K
  • NS2A:A194T

NS3

  • NS3:T356I

NS4A

  • NS4A:R41K
  • NS4A:A85T

NS5

  • NS5:K314R
  • NS5:Y374C

env

  • env:T123A
  • env:V159A
  • env:L167F
  • env:L412F

prM

  • prM:K9R
Deletions
N/A
Insertions
N/A

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