This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MNBF.1

Display Name: USA/LOC_000MNBF.1/2025-08-20
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Sample details

Collection date
2025-08-20
Collection date (lower bound)
2025-08-20
Collection date (upper bound)
2025-08-20
Earliest release date
2025-10-29
Collection country
USA
Collection subdivision level 1
Washington
Isolate name
WNV/USA/WAPHL-813011/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-04 15:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

INSDC

NCBI release date
2025-10-29
NCBI update date
2025-10-29
INSDC accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10751
Total SNPs
95
Total inserted nucs
0
Total deleted nucs
13
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
97.60%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PX471957.1
Submitting group
Date submitted
2025-12-04 15:41:50 UTC
Date released
2025-12-04 16:00:22 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C246T
  • A491G
  • C600T
  • A630G
  • C660T
  • G792A
  • C1119T
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • C2067T
  • A2097C
  • T2103C
  • C2200T
  • C2448T
  • C2466T
  • C2574T
    • Deletions
    10417-10429
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K
  • NS2A:A194T

    • NS3

  • NS3:T356I

    • NS4A

  • NS4A:R41K
  • NS4A:A85T

    • NS5

  • NS5:K314R
  • NS5:Y374C

    • env

  • env:T123A
  • env:V159A
  • env:L167F
  • env:L412F

    • prM

  • prM:K9R
    • Deletions
    None
    Insertions
    None

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