This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MN2Z.1

Japan/LOC_000MN2Z.1/2011-07-12
T. Furudate, M. Kikuchi & H. Narabayashi

Microbiology Division; 9-1 Kikusui Shiroishi-ku, Sapporo, Hokkaido 003-8505

Sample details

Collection date
2011-07-12
Earliest release date
2016-02-10
Sampling location
Japan (Hokkaido, Sapporo)
Isolate name
20114163-Sapporo-2011Jul

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-02-10
NCBI update date
2016-02-10
INSDC accession

Host

Host

Submission details

Submission ID
LC124107.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade CV-A10
D

Genotype

Genotype
CV-A10

Alignment and QC

Total SNPs
165
Length
717 (9.68%)

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions
  • A2193G
  • T2199A
  • A2208C
  • A2220G
  • C2226T
  • C2229T
  • A2235C
  • C2238T
  • A2242C
  • A2244C
  • C2250A
  • T2256A
  • T2259A
  • T2262A
  • T2268C
  • C2277T
  • T2283A
  • T2286A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY421767.1 reference

Substitutions

VP1

  • VP1:S13G
  • VP1:T21N
  • VP1:S22N
  • VP1:G23T
  • VP1:Q24S
  • VP1:D25N
  • VP1:N27E
  • VP1:T28S
  • VP1:G31N
  • VP1:M70V
  • VP1:T79S
  • VP1:I80V
  • VP1:S81N
  • VP1:L95M
  • VP1:T96S
  • VP1:V107T
  • VP1:F148Y
Deletions
N/A
Insertions
N/A

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