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LOC_000MKLZ.1
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Download FASTA
Download metadata TSV
Display Name: Hungary/LOC_000MKLZ.1/2023-09-06
A. Nagy,
G. E. Toth,
D. Cadar &
K. Kerenyi
Sample details
Collection date
2023-09-06
Collection date (lower bound)
2023-09-06
Collection date (upper bound)
2023-09-06
Earliest release date
2025-05-13
Collection country
Hungary
Collection subdivision level 1
Nagykanizsa
Isolate name
4485
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-10 19:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses
INSDC
NCBI release date
2025-05-13
NCBI update date
2025-05-13
INSDC accession
PV596759.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
10597
Total SNPs
1740
Total inserted nucs
35
Total deleted nucs
12
Total ambiguous nucs
0
Total unknown nucs
1985
Total frame shifts
0
Completeness
77.88%
Total stop codons
0
Submission details
Submission ID
PV596759.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-10 19:00:04 UTC
Date released
2025-11-10 19:18:52 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000MKLZ.1.embl
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
G
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
C
255
T
G
261
A
Show more
Deletions
10467-10470, 10487-10494
Insertions
ins_6614:CGN, ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10452:AGA, ins_10461:AG, ins_10483:GAT, ins_10501:T
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
S
9
G
NS1:
Y
34
F
NS1:
Y
35
H
NS1:
K
44
R
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
I
113
M
NS1:
L
123
I
NS1:
V
135
I
NS1:
K
141
E
NS1:
Q
146
A
NS1:
L
153
M
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
Show more
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
I
124
V
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
Show more
NS2B
NS2B:
A
41
V
NS2B:
S
61
T
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
119
I
NS2B:
V
120
I
NS3
NS3:
K
11
R
NS3:
F
130
Y
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
215
K
NS3:
A
233
S
NS3:
N
253
S
NS3:
I
257
V
NS3:
V
283
I
NS3:
S
347
T
NS3:
T
356
V
NS3:
V
384
I
NS3:
I
506
V
NS3:
F
509
L
NS3:
L
537
F
NS3:
I
597
A
NS3:
A
610
S
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4B
NS4B:
T
116
A
NS4B:
K
193
R
NS4B:
I
202
T
NS5
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
E
298
A
NS5:
D
312
E
NS5:
E
390
D
NS5:
R
392
K
NS5:
R
403
G
NS5:
R
422
K
NS5:
S
423
N
NS5:
H
450
N
NS5:
K
503
T
NS5:
R
522
K
NS5:
R
527
K
NS5:
R
546
K
NS5:
A
569
S
NS5:
R
590
K
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
T
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
env:
I
253
V
Show more
prM
prM:
M
44
L
prM:
D
46
E
prM:
S
57
A
prM:
A
73
S
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
None
Insertions
ins_NS4A:126:X
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