This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MKK1.1

Display Name: Russia/LOC_000MKK1.1/1963
K. K. Tuchynskaya, M. F. Vorovitch, Y. A. Kruglov, G. F. Mostipanova, I. S. Kholodilov, A. L. Ivanova, V. Kuchina, A. A. Rogova, G. G. Karganova & A. M. Butenko

Sample details

Collection date
1963
Collection date (lower bound)
1963-01-01
Collection date (upper bound)
1963-12-31
Earliest release date
2025-10-08
Collection country
Russia
Collection subdivision level 1
Astrakhan region
Isolate name
Hp-90

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS, Laboratory of biology of arboviruses

INSDC

NCBI release date
2025-10-08
NCBI update date
2025-10-08
INSDC accession

Host

Host taxon id
Host name scientific
Hyalomma plumbeum plumbeum

Alignment and QC metrics

Length
2587
Total SNPs
110
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
2
Total unknown nucs
0
Total frame shifts
0
Completeness
23.44%
Total stop codons
0

Submission details

Submission ID
PX444461.1
Submitting group
Date submitted
2025-10-27 14:17:35 UTC
Date released
2025-10-27 14:38:45 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A65G
  • T195A
  • G222A
  • C445T
  • A459G
  • G504T
  • T513C
  • T528C
  • C561T
  • C562T
  • T585C
  • A591G
  • C600T
  • T615C
  • C624T
  • A630G
  • G678A
  • C687T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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