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LOC_000MKFA.1
Download
Download FASTA
Download metadata TSV
Germany/CHVir-D24-06758/2024-09-01
J. Melchert &
V. M. Corman
Charite - Universitatsmedizin Berlin, Institute of Virology
Sample details
Collection date
2024-09
Earliest release date
2026-03-01
Sampling location
Germany
Isolate name
CHVir-D24-06758
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-09 06:40
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-03-01
NCBI update date
2026-03-01
INSDC accession
PV221469.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PV221469.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-09 06:40:05 UTC
Date released
2026-05-09 07:27:50 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000MKFA.1.embl
Alignment and QC
Total SNPs
425
Total deleted nucs
357
Total unknown nucs
1816
Total frame shifts
1
Frame shifts
env:65-67(nt:1159-1167)
Length
3719 (20.5%)
Amino Acid Mutations from founder clade
NS2B:
M
88
I
NS3:
K
11
R
env:
T
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
G
1163
A
T
1167
G
T
1182
C
C
1188
T
G
1191
A
C
1194
T
A
1200
T
T
1206
C
T
1212
C
C
1215
G
C
1219
A
T
1221
A
A
1230
C
T
1233
C
T
1236
C
G
1239
T
G
1244
A
A
1245
G
Show more
Deletions
999-1158, 1168-1178, 4879-5064
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
I
124
V
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
Show more
NS2B
NS2B:
A
41
V
NS2B:
S
61
T
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
120
I
NS3
NS3:
K
11
R
env
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
A
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
env:
I
253
V
Deletions
env
env:68-71
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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