This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MKEC.1

Display Name: USA/LOC_000MKEC.1/2023-09-21
F. Taki, S. Akther, J. Bologna, L. Qiu, N. De La Cruz, M. Chowdhury, X. Chen, M. Polanco, A. Olsen, E. Omoregie & U. Siemetzki-Kapoor

Sample details

Collection date
2023-09-21
Collection date (lower bound)
2023-09-21
Collection date (upper bound)
2023-09-21
Earliest release date
2025-08-06
Collection country
USA
Collection subdivision level 1
NY, New York City
Isolate name
WNV0000226

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
NYC Department of Health and Mental Hygiene, Public Health Laboratory

INSDC

NCBI release date
2025-08-06
NCBI update date
2025-08-06
INSDC accession
Biosample accession
Raw reads accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10917
Total SNPs
107
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
98.98%
Total stop codons
0

Submission details

Submission ID
PX056319.1
Submitting group
Date submitted
2025-10-27 14:17:35 UTC
Date released
2025-10-27 14:38:45 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C84T
  • C340T
  • T434C
  • C435T
  • A630G
  • T850C
  • C987T
  • A1005G
  • G1131A
  • T1407C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1767C
  • A2001T
  • C2025T
  • T2226C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:H119Y
  • NS2A:R188K

    • NS4A

  • NS4A:I6V

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:V113A

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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